viash_version: 0.9.4
source: src
target: target
name: openpipeline_composed
organization: vsh
links:
  repository: https://github.com/openpipelines-bio/openpipeline_composed
  docker_registry: ghcr.io
repositories:
  - name: openpipeline
    repo: openpipelines-bio/openpipeline
    type: github
    tag: 3.0.0
info:
  test_resources:
    - type: s3
      path: s3://openpipelines-bio/openpipeline_incubator/resources_test
      dest: resources_test
config_mods: |
  .requirements.commands := ['ps']
  .runners[.type == 'nextflow'].directives.tag := '$id'
  .resources += {path: '/src/configs/labels.config', dest: 'nextflow_labels.config'}
  .runners[.type == 'nextflow'].config.script := 'includeConfig("nextflow_labels.config")'
version: add-integration-methods