From b8ac2db1ac13b5e297d12e99064bb088b58dbf91 Mon Sep 17 00:00:00 2001 From: CI Date: Tue, 12 Aug 2025 14:44:58 +0000 Subject: [PATCH] Build branch build/main with version build_main (31245d8) Build pipeline: openpipelines-bio.openpipeline-qc.build-main-km8q4 Source commit: https://github.com/openpipelines-bio/openpipeline_qc/commit/31245d83cd69ca747cb4610bed18692a3a3914f0 Source message: deploy: 4b5539227ceaa6be5c7e97ca45fcf3aa025466fd --- CHANGELOG.MD | 3 +++ _viash.yaml | 4 ++-- .../ingestion_qc/h5mu_to_qc_json/.config.vsh.yaml | 8 ++++---- .../ingestion_qc/h5mu_to_qc_json/h5mu_to_qc_json | 8 ++++---- .../ingestion_qc/h5mu_to_qc_json/.config.vsh.yaml | 8 ++++---- .../nextflow/ingestion_qc/h5mu_to_qc_json/main.nf | 10 +++++----- .../detect_ingestion_method/.config.vsh.yaml | 8 ++++---- .../detect_ingestion_method/detect_ingestion_method | 8 ++++---- .../ingestion_qc/generate_html/.config.vsh.yaml | 8 ++++---- .../ingestion_qc/generate_html/generate_html | 8 ++++---- .../detect_ingestion_method/.config.vsh.yaml | 8 ++++---- .../ingestion_qc/detect_ingestion_method/main.nf | 10 +++++----- .../ingestion_qc/generate_html/.config.vsh.yaml | 8 ++++---- target/nextflow/ingestion_qc/generate_html/main.nf | 10 +++++----- .../workflows/generate_qc_report/.config.vsh.yaml | 8 ++++---- target/nextflow/workflows/generate_qc_report/main.nf | 8 ++++---- 16 files changed, 64 insertions(+), 61 deletions(-) create mode 100644 CHANGELOG.MD diff --git a/CHANGELOG.MD b/CHANGELOG.MD new file mode 100644 index 0000000..00f797c --- /dev/null +++ b/CHANGELOG.MD @@ -0,0 +1,3 @@ +# openpipeline_qc x.x.x + +Initial release containing a QC Reporting workflow for Xenium or CellRanger Multi ingested data, with corresponding components. \ No newline at end of file diff --git a/_viash.yaml b/_viash.yaml index 8d5bdc5..3361941 100644 --- a/_viash.yaml +++ b/_viash.yaml @@ -1,10 +1,10 @@ viash_version: 0.9.4 source: src target: target -name: openpipeline_incubator +name: openpipeline_qc organization: openpipelines-bio links: - repository: https://github.com/openpipelines-bio/openpipeline_incubator + repository: https://github.com/openpipelines-bio/openpipeline_qc docker_registry: ghcr.io repositories: - name: openpipeline diff --git a/target/_private/executable/ingestion_qc/h5mu_to_qc_json/.config.vsh.yaml b/target/_private/executable/ingestion_qc/h5mu_to_qc_json/.config.vsh.yaml index c88614a..5f65852 100644 --- a/target/_private/executable/ingestion_qc/h5mu_to_qc_json/.config.vsh.yaml +++ b/target/_private/executable/ingestion_qc/h5mu_to_qc_json/.config.vsh.yaml @@ -331,7 +331,7 @@ repositories: repo: "craftbox" tag: "v0.2.0" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" runners: - type: "executable" @@ -447,10 +447,10 @@ build_info: output: "target/_private/executable/ingestion_qc/h5mu_to_qc_json" executable: "target/_private/executable/ingestion_qc/h5mu_to_qc_json/h5mu_to_qc_json" viash_version: "0.9.4" - git_commit: "dfd68e55fafa27fc489f14bfab8ad04315f7f233" + git_commit: "31245d83cd69ca747cb4610bed18692a3a3914f0" git_remote: "https://github.com/openpipelines-bio/openpipeline_qc" package_config: - name: "openpipeline_incubator" + name: "openpipeline_qc" version: "build_main" info: test_resources: @@ -479,5 +479,5 @@ package_config: - ".engines[.type == 'docker'].target_tag := 'build_main'" organization: "vsh" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" diff --git a/target/_private/executable/ingestion_qc/h5mu_to_qc_json/h5mu_to_qc_json b/target/_private/executable/ingestion_qc/h5mu_to_qc_json/h5mu_to_qc_json index 65b947e..77f171e 100755 --- a/target/_private/executable/ingestion_qc/h5mu_to_qc_json/h5mu_to_qc_json +++ b/target/_private/executable/ingestion_qc/h5mu_to_qc_json/h5mu_to_qc_json @@ -461,9 +461,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik, Dorien Roosen, Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component ingestion_qc h5mu_to_qc_json" -LABEL org.opencontainers.image.created="2025-08-11T08:32:06Z" -LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_incubator" -LABEL org.opencontainers.image.revision="dfd68e55fafa27fc489f14bfab8ad04315f7f233" +LABEL org.opencontainers.image.created="2025-08-12T14:28:42Z" +LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_qc" +LABEL org.opencontainers.image.revision="31245d83cd69ca747cb4610bed18692a3a3914f0" LABEL org.opencontainers.image.version="build_main" VIASHDOCKER @@ -1092,7 +1092,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_incubator/ingestion_qc/h5mu_to_qc_json:build_main' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_qc/ingestion_qc/h5mu_to_qc_json:build_main' fi # print dockerfile diff --git a/target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/.config.vsh.yaml b/target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/.config.vsh.yaml index 6b67894..639e8a6 100644 --- a/target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/.config.vsh.yaml +++ b/target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/.config.vsh.yaml @@ -331,7 +331,7 @@ repositories: repo: "craftbox" tag: "v0.2.0" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" runners: - type: "executable" @@ -447,10 +447,10 @@ build_info: output: "target/_private/nextflow/ingestion_qc/h5mu_to_qc_json" executable: "target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/main.nf" viash_version: "0.9.4" - git_commit: "dfd68e55fafa27fc489f14bfab8ad04315f7f233" + git_commit: "31245d83cd69ca747cb4610bed18692a3a3914f0" git_remote: "https://github.com/openpipelines-bio/openpipeline_qc" package_config: - name: "openpipeline_incubator" + name: "openpipeline_qc" version: "build_main" info: test_resources: @@ -479,5 +479,5 @@ package_config: - ".engines[.type == 'docker'].target_tag := 'build_main'" organization: "vsh" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" diff --git a/target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/main.nf b/target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/main.nf index bc43249..f621a66 100644 --- a/target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/main.nf +++ b/target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/main.nf @@ -3471,7 +3471,7 @@ meta = [ } ], "links" : { - "repository" : "https://github.com/openpipelines-bio/openpipeline_incubator", + "repository" : "https://github.com/openpipelines-bio/openpipeline_qc", "docker_registry" : "ghcr.io" }, "runners" : [ @@ -3616,11 +3616,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/_private/nextflow/ingestion_qc/h5mu_to_qc_json", "viash_version" : "0.9.4", - "git_commit" : "dfd68e55fafa27fc489f14bfab8ad04315f7f233", + "git_commit" : "31245d83cd69ca747cb4610bed18692a3a3914f0", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_qc" }, "package_config" : { - "name" : "openpipeline_incubator", + "name" : "openpipeline_qc", "version" : "build_main", "info" : { "test_resources" : [ @@ -3656,7 +3656,7 @@ meta = [ ], "organization" : "vsh", "links" : { - "repository" : "https://github.com/openpipelines-bio/openpipeline_incubator", + "repository" : "https://github.com/openpipelines-bio/openpipeline_qc", "docker_registry" : "ghcr.io" } } @@ -4446,7 +4446,7 @@ meta["defaults"] = [ directives: readJsonBlob('''{ "container" : { "registry" : "images.viash-hub.com", - "image" : "vsh/openpipeline_incubator/ingestion_qc/h5mu_to_qc_json", + "image" : "vsh/openpipeline_qc/ingestion_qc/h5mu_to_qc_json", "tag" : "build_main" }, "label" : [ diff --git a/target/executable/ingestion_qc/detect_ingestion_method/.config.vsh.yaml b/target/executable/ingestion_qc/detect_ingestion_method/.config.vsh.yaml index fac5f77..d59a9dd 100644 --- a/target/executable/ingestion_qc/detect_ingestion_method/.config.vsh.yaml +++ b/target/executable/ingestion_qc/detect_ingestion_method/.config.vsh.yaml @@ -113,7 +113,7 @@ repositories: repo: "craftbox" tag: "v0.2.0" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" runners: - type: "executable" @@ -229,10 +229,10 @@ build_info: output: "target/executable/ingestion_qc/detect_ingestion_method" executable: "target/executable/ingestion_qc/detect_ingestion_method/detect_ingestion_method" viash_version: "0.9.4" - git_commit: "dfd68e55fafa27fc489f14bfab8ad04315f7f233" + git_commit: "31245d83cd69ca747cb4610bed18692a3a3914f0" git_remote: "https://github.com/openpipelines-bio/openpipeline_qc" package_config: - name: "openpipeline_incubator" + name: "openpipeline_qc" version: "build_main" info: test_resources: @@ -261,5 +261,5 @@ package_config: - ".engines[.type == 'docker'].target_tag := 'build_main'" organization: "vsh" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" diff --git a/target/executable/ingestion_qc/detect_ingestion_method/detect_ingestion_method b/target/executable/ingestion_qc/detect_ingestion_method/detect_ingestion_method index 04395e8..110c342 100755 --- a/target/executable/ingestion_qc/detect_ingestion_method/detect_ingestion_method +++ b/target/executable/ingestion_qc/detect_ingestion_method/detect_ingestion_method @@ -459,9 +459,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component ingestion_qc detect_ingestion_method" -LABEL org.opencontainers.image.created="2025-08-11T08:32:06Z" -LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_incubator" -LABEL org.opencontainers.image.revision="dfd68e55fafa27fc489f14bfab8ad04315f7f233" +LABEL org.opencontainers.image.created="2025-08-12T14:28:42Z" +LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_qc" +LABEL org.opencontainers.image.revision="31245d83cd69ca747cb4610bed18692a3a3914f0" LABEL org.opencontainers.image.version="build_main" VIASHDOCKER @@ -791,7 +791,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_incubator/ingestion_qc/detect_ingestion_method:build_main' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_qc/ingestion_qc/detect_ingestion_method:build_main' fi # print dockerfile diff --git a/target/executable/ingestion_qc/generate_html/.config.vsh.yaml b/target/executable/ingestion_qc/generate_html/.config.vsh.yaml index 547a06c..ea75ae5 100644 --- a/target/executable/ingestion_qc/generate_html/.config.vsh.yaml +++ b/target/executable/ingestion_qc/generate_html/.config.vsh.yaml @@ -132,7 +132,7 @@ repositories: repo: "craftbox" tag: "v0.2.0" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" runners: - type: "executable" @@ -231,10 +231,10 @@ build_info: output: "target/executable/ingestion_qc/generate_html" executable: "target/executable/ingestion_qc/generate_html/generate_html" viash_version: "0.9.4" - git_commit: "dfd68e55fafa27fc489f14bfab8ad04315f7f233" + git_commit: "31245d83cd69ca747cb4610bed18692a3a3914f0" git_remote: "https://github.com/openpipelines-bio/openpipeline_qc" package_config: - name: "openpipeline_incubator" + name: "openpipeline_qc" version: "build_main" info: test_resources: @@ -263,5 +263,5 @@ package_config: - ".engines[.type == 'docker'].target_tag := 'build_main'" organization: "vsh" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" diff --git a/target/executable/ingestion_qc/generate_html/generate_html b/target/executable/ingestion_qc/generate_html/generate_html index ab5d4ff..6651d4d 100755 --- a/target/executable/ingestion_qc/generate_html/generate_html +++ b/target/executable/ingestion_qc/generate_html/generate_html @@ -462,9 +462,9 @@ RUN npm install -g pnpm@latest-10 \ LABEL org.opencontainers.image.authors="Jakub Majercik, Dorien Roosen, Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component ingestion_qc generate_html" -LABEL org.opencontainers.image.created="2025-08-11T08:32:06Z" -LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_incubator" -LABEL org.opencontainers.image.revision="dfd68e55fafa27fc489f14bfab8ad04315f7f233" +LABEL org.opencontainers.image.created="2025-08-12T14:28:42Z" +LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_qc" +LABEL org.opencontainers.image.revision="31245d83cd69ca747cb4610bed18692a3a3914f0" LABEL org.opencontainers.image.version="build_main" VIASHDOCKER @@ -774,7 +774,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_incubator/ingestion_qc/generate_html:build_main' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_qc/ingestion_qc/generate_html:build_main' fi # print dockerfile diff --git a/target/nextflow/ingestion_qc/detect_ingestion_method/.config.vsh.yaml b/target/nextflow/ingestion_qc/detect_ingestion_method/.config.vsh.yaml index 81674ec..cc2fd52 100644 --- a/target/nextflow/ingestion_qc/detect_ingestion_method/.config.vsh.yaml +++ b/target/nextflow/ingestion_qc/detect_ingestion_method/.config.vsh.yaml @@ -113,7 +113,7 @@ repositories: repo: "craftbox" tag: "v0.2.0" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" runners: - type: "executable" @@ -229,10 +229,10 @@ build_info: output: "target/nextflow/ingestion_qc/detect_ingestion_method" executable: "target/nextflow/ingestion_qc/detect_ingestion_method/main.nf" viash_version: "0.9.4" - git_commit: "dfd68e55fafa27fc489f14bfab8ad04315f7f233" + git_commit: "31245d83cd69ca747cb4610bed18692a3a3914f0" git_remote: "https://github.com/openpipelines-bio/openpipeline_qc" package_config: - name: "openpipeline_incubator" + name: "openpipeline_qc" version: "build_main" info: test_resources: @@ -261,5 +261,5 @@ package_config: - ".engines[.type == 'docker'].target_tag := 'build_main'" organization: "vsh" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" diff --git a/target/nextflow/ingestion_qc/detect_ingestion_method/main.nf b/target/nextflow/ingestion_qc/detect_ingestion_method/main.nf index 00053e8..c85003d 100644 --- a/target/nextflow/ingestion_qc/detect_ingestion_method/main.nf +++ b/target/nextflow/ingestion_qc/detect_ingestion_method/main.nf @@ -3200,7 +3200,7 @@ meta = [ } ], "links" : { - "repository" : "https://github.com/openpipelines-bio/openpipeline_incubator", + "repository" : "https://github.com/openpipelines-bio/openpipeline_qc", "docker_registry" : "ghcr.io" }, "runners" : [ @@ -3345,11 +3345,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/ingestion_qc/detect_ingestion_method", "viash_version" : "0.9.4", - "git_commit" : "dfd68e55fafa27fc489f14bfab8ad04315f7f233", + "git_commit" : "31245d83cd69ca747cb4610bed18692a3a3914f0", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_qc" }, "package_config" : { - "name" : "openpipeline_incubator", + "name" : "openpipeline_qc", "version" : "build_main", "info" : { "test_resources" : [ @@ -3385,7 +3385,7 @@ meta = [ ], "organization" : "vsh", "links" : { - "repository" : "https://github.com/openpipelines-bio/openpipeline_incubator", + "repository" : "https://github.com/openpipelines-bio/openpipeline_qc", "docker_registry" : "ghcr.io" } } @@ -3871,7 +3871,7 @@ meta["defaults"] = [ directives: readJsonBlob('''{ "container" : { "registry" : "images.viash-hub.com", - "image" : "vsh/openpipeline_incubator/ingestion_qc/detect_ingestion_method", + "image" : "vsh/openpipeline_qc/ingestion_qc/detect_ingestion_method", "tag" : "build_main" }, "label" : [ diff --git a/target/nextflow/ingestion_qc/generate_html/.config.vsh.yaml b/target/nextflow/ingestion_qc/generate_html/.config.vsh.yaml index 73c3291..cbf8f6e 100644 --- a/target/nextflow/ingestion_qc/generate_html/.config.vsh.yaml +++ b/target/nextflow/ingestion_qc/generate_html/.config.vsh.yaml @@ -132,7 +132,7 @@ repositories: repo: "craftbox" tag: "v0.2.0" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" runners: - type: "executable" @@ -231,10 +231,10 @@ build_info: output: "target/nextflow/ingestion_qc/generate_html" executable: "target/nextflow/ingestion_qc/generate_html/main.nf" viash_version: "0.9.4" - git_commit: "dfd68e55fafa27fc489f14bfab8ad04315f7f233" + git_commit: "31245d83cd69ca747cb4610bed18692a3a3914f0" git_remote: "https://github.com/openpipelines-bio/openpipeline_qc" package_config: - name: "openpipeline_incubator" + name: "openpipeline_qc" version: "build_main" info: test_resources: @@ -263,5 +263,5 @@ package_config: - ".engines[.type == 'docker'].target_tag := 'build_main'" organization: "vsh" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" diff --git a/target/nextflow/ingestion_qc/generate_html/main.nf b/target/nextflow/ingestion_qc/generate_html/main.nf index e401b57..41a0706 100644 --- a/target/nextflow/ingestion_qc/generate_html/main.nf +++ b/target/nextflow/ingestion_qc/generate_html/main.nf @@ -3240,7 +3240,7 @@ meta = [ } ], "links" : { - "repository" : "https://github.com/openpipelines-bio/openpipeline_incubator", + "repository" : "https://github.com/openpipelines-bio/openpipeline_qc", "docker_registry" : "ghcr.io" }, "runners" : [ @@ -3359,11 +3359,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/ingestion_qc/generate_html", "viash_version" : "0.9.4", - "git_commit" : "dfd68e55fafa27fc489f14bfab8ad04315f7f233", + "git_commit" : "31245d83cd69ca747cb4610bed18692a3a3914f0", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_qc" }, "package_config" : { - "name" : "openpipeline_incubator", + "name" : "openpipeline_qc", "version" : "build_main", "info" : { "test_resources" : [ @@ -3399,7 +3399,7 @@ meta = [ ], "organization" : "vsh", "links" : { - "repository" : "https://github.com/openpipelines-bio/openpipeline_incubator", + "repository" : "https://github.com/openpipelines-bio/openpipeline_qc", "docker_registry" : "ghcr.io" } } @@ -3839,7 +3839,7 @@ meta["defaults"] = [ directives: readJsonBlob('''{ "container" : { "registry" : "images.viash-hub.com", - "image" : "vsh/openpipeline_incubator/ingestion_qc/generate_html", + "image" : "vsh/openpipeline_qc/ingestion_qc/generate_html", "tag" : "build_main" }, "label" : [ diff --git a/target/nextflow/workflows/generate_qc_report/.config.vsh.yaml b/target/nextflow/workflows/generate_qc_report/.config.vsh.yaml index 26b192c..59c17b2 100644 --- a/target/nextflow/workflows/generate_qc_report/.config.vsh.yaml +++ b/target/nextflow/workflows/generate_qc_report/.config.vsh.yaml @@ -276,7 +276,7 @@ repositories: repo: "craftbox" tag: "v0.2.0" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" runners: - type: "nextflow" @@ -352,7 +352,7 @@ build_info: output: "target/nextflow/workflows/generate_qc_report" executable: "target/nextflow/workflows/generate_qc_report/main.nf" viash_version: "0.9.4" - git_commit: "dfd68e55fafa27fc489f14bfab8ad04315f7f233" + git_commit: "31245d83cd69ca747cb4610bed18692a3a3914f0" git_remote: "https://github.com/openpipelines-bio/openpipeline_qc" dependencies: - "target/dependencies/github/openpipelines-bio/openpipeline/2.1.2/nextflow/metadata/add_id" @@ -362,7 +362,7 @@ build_info: - "target/nextflow/ingestion_qc/generate_html" - "target/dependencies/vsh/vsh/craftbox/v0.2.0/nextflow/move_files_to_directory" package_config: - name: "openpipeline_incubator" + name: "openpipeline_qc" version: "build_main" info: test_resources: @@ -391,5 +391,5 @@ package_config: - ".engines[.type == 'docker'].target_tag := 'build_main'" organization: "vsh" links: - repository: "https://github.com/openpipelines-bio/openpipeline_incubator" + repository: "https://github.com/openpipelines-bio/openpipeline_qc" docker_registry: "ghcr.io" diff --git a/target/nextflow/workflows/generate_qc_report/main.nf b/target/nextflow/workflows/generate_qc_report/main.nf index 02e402a..2e5cc61 100644 --- a/target/nextflow/workflows/generate_qc_report/main.nf +++ b/target/nextflow/workflows/generate_qc_report/main.nf @@ -3419,7 +3419,7 @@ meta = [ } ], "links" : { - "repository" : "https://github.com/openpipelines-bio/openpipeline_incubator", + "repository" : "https://github.com/openpipelines-bio/openpipeline_qc", "docker_registry" : "ghcr.io" }, "runners" : [ @@ -3506,11 +3506,11 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/generate_qc_report", "viash_version" : "0.9.4", - "git_commit" : "dfd68e55fafa27fc489f14bfab8ad04315f7f233", + "git_commit" : "31245d83cd69ca747cb4610bed18692a3a3914f0", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_qc" }, "package_config" : { - "name" : "openpipeline_incubator", + "name" : "openpipeline_qc", "version" : "build_main", "info" : { "test_resources" : [ @@ -3546,7 +3546,7 @@ meta = [ ], "organization" : "vsh", "links" : { - "repository" : "https://github.com/openpipelines-bio/openpipeline_incubator", + "repository" : "https://github.com/openpipelines-bio/openpipeline_qc", "docker_registry" : "ghcr.io" } }