CI
0b7c0b6f20
Build pipeline: openpipelines-bio.openpipeline-qc.v0.3-kc9nz
Source commit: 52e79b8481
Source message: update version
23 lines
622 B
Python
23 lines
622 B
Python
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import mudata as mu
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import pandas as pd
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def inspect_h5mu(filepath, name):
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print(f"--- Inspecting {name} ({filepath}) ---")
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try:
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mdata = mu.read_h5mu(filepath)
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rna = mdata.mod['rna']
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print(f"Obs columns ({len(rna.obs.columns)}):")
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print(rna.obs.columns.tolist())
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print(f"\nObs head:")
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print(rna.obs.head())
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print(f"\nObsm keys: {list(rna.obsm.keys())}")
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except Exception as e:
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print(f"Error reading {filepath}: {e}")
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print("\n")
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inspect_h5mu("resources_test/spatial_qc_sample_data/visium_tiny.qc.h5mu", "Visium")
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