# Inputs
input: # please fill in - example: "input.h5mu"
modality: "rna"
# layer: "raw_counts"

# Metrics added to .obs
# var_qc_metrics: ["ercc,highly_variable,mitochondrial"]
# var_qc_metrics_fill_na_value: true
# top_n_vars: [123]
output_obs_num_nonzero_vars: "num_nonzero_vars"
output_obs_total_counts_vars: "total_counts"

# Metrics added to .var
output_var_num_nonzero_obs: "num_nonzero_obs"
output_var_total_counts_obs: "total_counts"
output_var_obs_mean: "obs_mean"
output_var_pct_dropout: "pct_dropout"

# Outputs
# output: "$id.$key.output.h5mu"
# output_compression: "gzip"

# Nextflow input-output arguments
publish_dir: # please fill in - example: "output/"
# param_list: "my_params.yaml"

# Arguments
