diff --git a/target/executable/convert/from_cells2stats_to_h5mu/.config.vsh.yaml b/target/executable/convert/from_cells2stats_to_h5mu/.config.vsh.yaml index 3b0f6e5..d9c5e4f 100644 --- a/target/executable/convert/from_cells2stats_to_h5mu/.config.vsh.yaml +++ b/target/executable/convert/from_cells2stats_to_h5mu/.config.vsh.yaml @@ -290,7 +290,7 @@ build_info: output: "target/executable/convert/from_cells2stats_to_h5mu" executable: "target/executable/convert/from_cells2stats_to_h5mu/from_cells2stats_to_h5mu" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/executable/convert/from_cells2stats_to_h5mu/from_cells2stats_to_h5mu b/target/executable/convert/from_cells2stats_to_h5mu/from_cells2stats_to_h5mu index 2156fc8..0cc4a25 100755 --- a/target/executable/convert/from_cells2stats_to_h5mu/from_cells2stats_to_h5mu +++ b/target/executable/convert/from_cells2stats_to_h5mu/from_cells2stats_to_h5mu @@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component convert from_cells2stats_to_h5mu" -LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z" +LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial" -LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325" +LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192" LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER diff --git a/target/executable/convert/from_cosmx_to_h5mu/.config.vsh.yaml b/target/executable/convert/from_cosmx_to_h5mu/.config.vsh.yaml index 17dc984..0662ee9 100644 --- a/target/executable/convert/from_cosmx_to_h5mu/.config.vsh.yaml +++ b/target/executable/convert/from_cosmx_to_h5mu/.config.vsh.yaml @@ -225,7 +225,7 @@ build_info: output: "target/executable/convert/from_cosmx_to_h5mu" executable: "target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu b/target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu index c491493..66b46b9 100755 --- a/target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu +++ b/target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu @@ -459,9 +459,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component convert from_cosmx_to_h5mu" -LABEL org.opencontainers.image.created="2025-08-25T07:30:21Z" +LABEL org.opencontainers.image.created="2025-08-25T08:17:06Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial" -LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325" +LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192" LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER diff --git a/target/executable/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml b/target/executable/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml index e1e6fab..21d960c 100644 --- a/target/executable/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml +++ b/target/executable/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml @@ -232,7 +232,7 @@ build_info: output: "target/executable/convert/from_cosmx_to_spatialexperiment" executable: "target/executable/convert/from_cosmx_to_spatialexperiment/from_cosmx_to_spatialexperiment" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/executable/convert/from_cosmx_to_spatialexperiment/from_cosmx_to_spatialexperiment b/target/executable/convert/from_cosmx_to_spatialexperiment/from_cosmx_to_spatialexperiment index 5b1aa1c..a4c3da8 100755 --- a/target/executable/convert/from_cosmx_to_spatialexperiment/from_cosmx_to_spatialexperiment +++ b/target/executable/convert/from_cosmx_to_spatialexperiment/from_cosmx_to_spatialexperiment @@ -457,9 +457,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("BiocManager", quietly LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component convert from_cosmx_to_spatialexperiment" -LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z" +LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial" -LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325" +LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192" LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER diff --git a/target/executable/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml b/target/executable/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml index ca2da8b..3870daa 100644 --- a/target/executable/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml +++ b/target/executable/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml @@ -224,7 +224,7 @@ build_info: output: "target/executable/convert/from_h5mu_to_spatialexperiment" executable: "target/executable/convert/from_h5mu_to_spatialexperiment/from_h5mu_to_spatialexperiment" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/executable/convert/from_h5mu_to_spatialexperiment/from_h5mu_to_spatialexperiment b/target/executable/convert/from_h5mu_to_spatialexperiment/from_h5mu_to_spatialexperiment index 212bb8a..bda5415 100755 --- a/target/executable/convert/from_h5mu_to_spatialexperiment/from_h5mu_to_spatialexperiment +++ b/target/executable/convert/from_h5mu_to_spatialexperiment/from_h5mu_to_spatialexperiment @@ -458,9 +458,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component convert from_h5mu_to_spatialexperiment" -LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z" +LABEL org.opencontainers.image.created="2025-08-25T08:17:06Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial" -LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325" +LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192" LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER diff --git a/target/executable/convert/from_spatialdata_to_h5mu/.config.vsh.yaml b/target/executable/convert/from_spatialdata_to_h5mu/.config.vsh.yaml index d6299d4..ec91206 100644 --- a/target/executable/convert/from_spatialdata_to_h5mu/.config.vsh.yaml +++ b/target/executable/convert/from_spatialdata_to_h5mu/.config.vsh.yaml @@ -220,7 +220,7 @@ build_info: output: "target/executable/convert/from_spatialdata_to_h5mu" executable: "target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu b/target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu index d45791b..39e2227 100755 --- a/target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu +++ b/target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu @@ -459,9 +459,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component convert from_spatialdata_to_h5mu" -LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z" +LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial" -LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325" +LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192" LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER diff --git a/target/executable/convert/from_xenium_to_h5mu/.config.vsh.yaml b/target/executable/convert/from_xenium_to_h5mu/.config.vsh.yaml index 73715f8..7516a91 100644 --- a/target/executable/convert/from_xenium_to_h5mu/.config.vsh.yaml +++ b/target/executable/convert/from_xenium_to_h5mu/.config.vsh.yaml @@ -233,7 +233,7 @@ build_info: output: "target/executable/convert/from_xenium_to_h5mu" executable: "target/executable/convert/from_xenium_to_h5mu/from_xenium_to_h5mu" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/executable/convert/from_xenium_to_h5mu/from_xenium_to_h5mu b/target/executable/convert/from_xenium_to_h5mu/from_xenium_to_h5mu index ee49fcb..352055a 100755 --- a/target/executable/convert/from_xenium_to_h5mu/from_xenium_to_h5mu +++ b/target/executable/convert/from_xenium_to_h5mu/from_xenium_to_h5mu @@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component convert from_xenium_to_h5mu" -LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z" +LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial" -LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325" +LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192" LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER diff --git a/target/executable/convert/from_xenium_to_spatialdata/.config.vsh.yaml b/target/executable/convert/from_xenium_to_spatialdata/.config.vsh.yaml index ca56e41..592da2e 100644 --- a/target/executable/convert/from_xenium_to_spatialdata/.config.vsh.yaml +++ b/target/executable/convert/from_xenium_to_spatialdata/.config.vsh.yaml @@ -314,7 +314,7 @@ build_info: output: "target/executable/convert/from_xenium_to_spatialdata" executable: "target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata b/target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata index fbc6254..969dc97 100755 --- a/target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata +++ b/target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata @@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component convert from_xenium_to_spatialdata" -LABEL org.opencontainers.image.created="2025-08-25T07:30:21Z" +LABEL org.opencontainers.image.created="2025-08-25T08:17:06Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial" -LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325" +LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192" LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER diff --git a/target/executable/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml b/target/executable/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml index 6531e60..5b3d7ba 100644 --- a/target/executable/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml +++ b/target/executable/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml @@ -222,7 +222,7 @@ build_info: output: "target/executable/convert/from_xenium_to_spatialexperiment" executable: "target/executable/convert/from_xenium_to_spatialexperiment/from_xenium_to_spatialexperiment" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/executable/convert/from_xenium_to_spatialexperiment/from_xenium_to_spatialexperiment b/target/executable/convert/from_xenium_to_spatialexperiment/from_xenium_to_spatialexperiment index 6c9c376..55ffc78 100755 --- a/target/executable/convert/from_xenium_to_spatialexperiment/from_xenium_to_spatialexperiment +++ b/target/executable/convert/from_xenium_to_spatialexperiment/from_xenium_to_spatialexperiment @@ -457,9 +457,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("BiocManager", quietly LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component convert from_xenium_to_spatialexperiment" -LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z" +LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial" -LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325" +LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192" LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER diff --git a/target/executable/filter/subset_cosmx/.config.vsh.yaml b/target/executable/filter/subset_cosmx/.config.vsh.yaml index 03847d2..dcdc94b 100644 --- a/target/executable/filter/subset_cosmx/.config.vsh.yaml +++ b/target/executable/filter/subset_cosmx/.config.vsh.yaml @@ -227,7 +227,7 @@ build_info: output: "target/executable/filter/subset_cosmx" executable: "target/executable/filter/subset_cosmx/subset_cosmx" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/executable/filter/subset_cosmx/subset_cosmx b/target/executable/filter/subset_cosmx/subset_cosmx index 6686955..8a12b3b 100755 --- a/target/executable/filter/subset_cosmx/subset_cosmx +++ b/target/executable/filter/subset_cosmx/subset_cosmx @@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component filter subset_cosmx" -LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z" +LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial" -LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325" +LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192" LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER diff --git a/target/executable/mapping/spaceranger_count/.config.vsh.yaml b/target/executable/mapping/spaceranger_count/.config.vsh.yaml index 1e964b9..c33663a 100644 --- a/target/executable/mapping/spaceranger_count/.config.vsh.yaml +++ b/target/executable/mapping/spaceranger_count/.config.vsh.yaml @@ -426,7 +426,7 @@ build_info: output: "target/executable/mapping/spaceranger_count" executable: "target/executable/mapping/spaceranger_count/spaceranger_count" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/executable/mapping/spaceranger_count/spaceranger_count b/target/executable/mapping/spaceranger_count/spaceranger_count index 403a82e..12b0d0d 100755 --- a/target/executable/mapping/spaceranger_count/spaceranger_count +++ b/target/executable/mapping/spaceranger_count/spaceranger_count @@ -453,9 +453,9 @@ apt upgrade -y && apt install -y procps && rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component mapping spaceranger_count" -LABEL org.opencontainers.image.created="2025-08-25T07:30:21Z" +LABEL org.opencontainers.image.created="2025-08-25T08:17:06Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial" -LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325" +LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192" LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER diff --git a/target/nextflow/convert/from_cells2stats_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_cells2stats_to_h5mu/.config.vsh.yaml index 01f5ddc..569573b 100644 --- a/target/nextflow/convert/from_cells2stats_to_h5mu/.config.vsh.yaml +++ b/target/nextflow/convert/from_cells2stats_to_h5mu/.config.vsh.yaml @@ -290,7 +290,7 @@ build_info: output: "target/nextflow/convert/from_cells2stats_to_h5mu" executable: "target/nextflow/convert/from_cells2stats_to_h5mu/main.nf" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/nextflow/convert/from_cells2stats_to_h5mu/main.nf b/target/nextflow/convert/from_cells2stats_to_h5mu/main.nf index 45899bc..d79b12e 100644 --- a/target/nextflow/convert/from_cells2stats_to_h5mu/main.nf +++ b/target/nextflow/convert/from_cells2stats_to_h5mu/main.nf @@ -3382,7 +3382,7 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_cells2stats_to_h5mu", "viash_version" : "0.9.4", - "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325", + "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial" }, "package_config" : { diff --git a/target/nextflow/convert/from_cosmx_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_cosmx_to_h5mu/.config.vsh.yaml index 0e3060f..c0ad2a4 100644 --- a/target/nextflow/convert/from_cosmx_to_h5mu/.config.vsh.yaml +++ b/target/nextflow/convert/from_cosmx_to_h5mu/.config.vsh.yaml @@ -225,7 +225,7 @@ build_info: output: "target/nextflow/convert/from_cosmx_to_h5mu" executable: "target/nextflow/convert/from_cosmx_to_h5mu/main.nf" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/nextflow/convert/from_cosmx_to_h5mu/main.nf b/target/nextflow/convert/from_cosmx_to_h5mu/main.nf index 072c913..25a0a49 100644 --- a/target/nextflow/convert/from_cosmx_to_h5mu/main.nf +++ b/target/nextflow/convert/from_cosmx_to_h5mu/main.nf @@ -3331,7 +3331,7 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_cosmx_to_h5mu", "viash_version" : "0.9.4", - "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325", + "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial" }, "package_config" : { diff --git a/target/nextflow/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml b/target/nextflow/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml index ae0ea87..fbdf920 100644 --- a/target/nextflow/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml +++ b/target/nextflow/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml @@ -232,7 +232,7 @@ build_info: output: "target/nextflow/convert/from_cosmx_to_spatialexperiment" executable: "target/nextflow/convert/from_cosmx_to_spatialexperiment/main.nf" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/nextflow/convert/from_cosmx_to_spatialexperiment/main.nf b/target/nextflow/convert/from_cosmx_to_spatialexperiment/main.nf index 503ab84..3d838be 100644 --- a/target/nextflow/convert/from_cosmx_to_spatialexperiment/main.nf +++ b/target/nextflow/convert/from_cosmx_to_spatialexperiment/main.nf @@ -3322,7 +3322,7 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_cosmx_to_spatialexperiment", "viash_version" : "0.9.4", - "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325", + "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial" }, "package_config" : { diff --git a/target/nextflow/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml b/target/nextflow/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml index 4679fda..41adc92 100644 --- a/target/nextflow/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml +++ b/target/nextflow/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml @@ -224,7 +224,7 @@ build_info: output: "target/nextflow/convert/from_h5mu_to_spatialexperiment" executable: "target/nextflow/convert/from_h5mu_to_spatialexperiment/main.nf" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/nextflow/convert/from_h5mu_to_spatialexperiment/main.nf b/target/nextflow/convert/from_h5mu_to_spatialexperiment/main.nf index d4a11e6..96f55f9 100644 --- a/target/nextflow/convert/from_h5mu_to_spatialexperiment/main.nf +++ b/target/nextflow/convert/from_h5mu_to_spatialexperiment/main.nf @@ -3332,7 +3332,7 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_h5mu_to_spatialexperiment", "viash_version" : "0.9.4", - "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325", + "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial" }, "package_config" : { diff --git a/target/nextflow/convert/from_spatialdata_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_spatialdata_to_h5mu/.config.vsh.yaml index f0805c5..413233e 100644 --- a/target/nextflow/convert/from_spatialdata_to_h5mu/.config.vsh.yaml +++ b/target/nextflow/convert/from_spatialdata_to_h5mu/.config.vsh.yaml @@ -220,7 +220,7 @@ build_info: output: "target/nextflow/convert/from_spatialdata_to_h5mu" executable: "target/nextflow/convert/from_spatialdata_to_h5mu/main.nf" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/nextflow/convert/from_spatialdata_to_h5mu/main.nf b/target/nextflow/convert/from_spatialdata_to_h5mu/main.nf index 99c31f6..99dd1c1 100644 --- a/target/nextflow/convert/from_spatialdata_to_h5mu/main.nf +++ b/target/nextflow/convert/from_spatialdata_to_h5mu/main.nf @@ -3330,7 +3330,7 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_spatialdata_to_h5mu", "viash_version" : "0.9.4", - "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325", + "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial" }, "package_config" : { diff --git a/target/nextflow/convert/from_xenium_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_xenium_to_h5mu/.config.vsh.yaml index 40340ff..2b8761b 100644 --- a/target/nextflow/convert/from_xenium_to_h5mu/.config.vsh.yaml +++ b/target/nextflow/convert/from_xenium_to_h5mu/.config.vsh.yaml @@ -233,7 +233,7 @@ build_info: output: "target/nextflow/convert/from_xenium_to_h5mu" executable: "target/nextflow/convert/from_xenium_to_h5mu/main.nf" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/nextflow/convert/from_xenium_to_h5mu/main.nf b/target/nextflow/convert/from_xenium_to_h5mu/main.nf index 046993a..e42d64b 100644 --- a/target/nextflow/convert/from_xenium_to_h5mu/main.nf +++ b/target/nextflow/convert/from_xenium_to_h5mu/main.nf @@ -3331,7 +3331,7 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_xenium_to_h5mu", "viash_version" : "0.9.4", - "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325", + "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial" }, "package_config" : { diff --git a/target/nextflow/convert/from_xenium_to_spatialdata/.config.vsh.yaml b/target/nextflow/convert/from_xenium_to_spatialdata/.config.vsh.yaml index 303da20..1e0a984 100644 --- a/target/nextflow/convert/from_xenium_to_spatialdata/.config.vsh.yaml +++ b/target/nextflow/convert/from_xenium_to_spatialdata/.config.vsh.yaml @@ -314,7 +314,7 @@ build_info: output: "target/nextflow/convert/from_xenium_to_spatialdata" executable: "target/nextflow/convert/from_xenium_to_spatialdata/main.nf" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/nextflow/convert/from_xenium_to_spatialdata/main.nf b/target/nextflow/convert/from_xenium_to_spatialdata/main.nf index 69c923b..5e8fc6d 100644 --- a/target/nextflow/convert/from_xenium_to_spatialdata/main.nf +++ b/target/nextflow/convert/from_xenium_to_spatialdata/main.nf @@ -3425,7 +3425,7 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_xenium_to_spatialdata", "viash_version" : "0.9.4", - "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325", + "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial" }, "package_config" : { diff --git a/target/nextflow/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml b/target/nextflow/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml index cbd6fe5..05c8490 100644 --- a/target/nextflow/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml +++ b/target/nextflow/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml @@ -222,7 +222,7 @@ build_info: output: "target/nextflow/convert/from_xenium_to_spatialexperiment" executable: "target/nextflow/convert/from_xenium_to_spatialexperiment/main.nf" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/nextflow/convert/from_xenium_to_spatialexperiment/main.nf b/target/nextflow/convert/from_xenium_to_spatialexperiment/main.nf index 1b7ab88..ef122fd 100644 --- a/target/nextflow/convert/from_xenium_to_spatialexperiment/main.nf +++ b/target/nextflow/convert/from_xenium_to_spatialexperiment/main.nf @@ -3311,7 +3311,7 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_xenium_to_spatialexperiment", "viash_version" : "0.9.4", - "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325", + "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial" }, "package_config" : { diff --git a/target/nextflow/filter/subset_cosmx/.config.vsh.yaml b/target/nextflow/filter/subset_cosmx/.config.vsh.yaml index 91743e0..6e596d0 100644 --- a/target/nextflow/filter/subset_cosmx/.config.vsh.yaml +++ b/target/nextflow/filter/subset_cosmx/.config.vsh.yaml @@ -227,7 +227,7 @@ build_info: output: "target/nextflow/filter/subset_cosmx" executable: "target/nextflow/filter/subset_cosmx/main.nf" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/nextflow/filter/subset_cosmx/main.nf b/target/nextflow/filter/subset_cosmx/main.nf index 8fc2c89..1eb1bb0 100644 --- a/target/nextflow/filter/subset_cosmx/main.nf +++ b/target/nextflow/filter/subset_cosmx/main.nf @@ -3333,7 +3333,7 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/filter/subset_cosmx", "viash_version" : "0.9.4", - "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325", + "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial" }, "package_config" : { diff --git a/target/nextflow/mapping/spaceranger_count/.config.vsh.yaml b/target/nextflow/mapping/spaceranger_count/.config.vsh.yaml index 3531e15..891b1e1 100644 --- a/target/nextflow/mapping/spaceranger_count/.config.vsh.yaml +++ b/target/nextflow/mapping/spaceranger_count/.config.vsh.yaml @@ -426,7 +426,7 @@ build_info: output: "target/nextflow/mapping/spaceranger_count" executable: "target/nextflow/mapping/spaceranger_count/main.nf" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" package_config: name: "openpipeline_spatial" diff --git a/target/nextflow/mapping/spaceranger_count/main.nf b/target/nextflow/mapping/spaceranger_count/main.nf index 91c00a0..d050355 100644 --- a/target/nextflow/mapping/spaceranger_count/main.nf +++ b/target/nextflow/mapping/spaceranger_count/main.nf @@ -3548,7 +3548,7 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/spaceranger_count", "viash_version" : "0.9.4", - "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325", + "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial" }, "package_config" : { diff --git a/target/nextflow/workflows/multiomics/spatial_process_samples/.config.vsh.yaml b/target/nextflow/workflows/multiomics/spatial_process_samples/.config.vsh.yaml index 87aee32..c03db62 100644 --- a/target/nextflow/workflows/multiomics/spatial_process_samples/.config.vsh.yaml +++ b/target/nextflow/workflows/multiomics/spatial_process_samples/.config.vsh.yaml @@ -644,7 +644,7 @@ build_info: output: "target/nextflow/workflows/multiomics/spatial_process_samples" executable: "target/nextflow/workflows/multiomics/spatial_process_samples/main.nf" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" dependencies: - "target/dependencies/github/openpipelines-bio/openpipeline/disable-scrublet_build/nextflow/workflows/multiomics/process_samples" diff --git a/target/nextflow/workflows/multiomics/spatial_process_samples/main.nf b/target/nextflow/workflows/multiomics/spatial_process_samples/main.nf index 9081758..8e64715 100644 --- a/target/nextflow/workflows/multiomics/spatial_process_samples/main.nf +++ b/target/nextflow/workflows/multiomics/spatial_process_samples/main.nf @@ -3813,7 +3813,7 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/multiomics/spatial_process_samples", "viash_version" : "0.9.4", - "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325", + "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial" }, "package_config" : { diff --git a/target/nextflow/workflows/qc/spatial_qc/.config.vsh.yaml b/target/nextflow/workflows/qc/spatial_qc/.config.vsh.yaml index b1e35cb..9c63298 100644 --- a/target/nextflow/workflows/qc/spatial_qc/.config.vsh.yaml +++ b/target/nextflow/workflows/qc/spatial_qc/.config.vsh.yaml @@ -387,7 +387,7 @@ build_info: output: "target/nextflow/workflows/qc/spatial_qc" executable: "target/nextflow/workflows/qc/spatial_qc/main.nf" viash_version: "0.9.4" - git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325" + git_commit: "963107088819638e9e15d4f413c0a763dc81a192" git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial" dependencies: - "target/dependencies/vsh/vsh/openpipeline/v3.0.0/nextflow/workflows/qc/qc" diff --git a/target/nextflow/workflows/qc/spatial_qc/main.nf b/target/nextflow/workflows/qc/spatial_qc/main.nf index 2cfa315..b0ae467 100644 --- a/target/nextflow/workflows/qc/spatial_qc/main.nf +++ b/target/nextflow/workflows/qc/spatial_qc/main.nf @@ -3505,7 +3505,7 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/qc/spatial_qc", "viash_version" : "0.9.4", - "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325", + "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192", "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial" }, "package_config" : {