Build branch build/main with version build_main (280b21f)

Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-6h5zv

Source commit: 280b21fc21

Source message: deploy: 6840f3802d04d96d44f29d3cdbd31c62d144b14d
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2025-07-24 15:39:45 +00:00
parent b59203a4af
commit 72b5c7c839
375 changed files with 191080 additions and 560 deletions

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## NEW FUNCTIONALITY
* `filter/subset_cosmx`: Added a component to subset COSMX data (PR #3).
* `filter/subset_cosmx`: Added a component to subset COSMX data (PR #3, PR #9).
* `convert/from_cosmx_to_h5mu`: Added converter component for COSMX data (PR #3).
* `convert/from_cosmx_to_h5mu`: Added converter component for COSMX data (PR #3, PR #9).
* `mapping/spaceranger_count`: Added a spaceranger count component (PR #2).
* `convert/from_spatialdata_to_h5mu`, `convert/from_xenium_to_spatialdata`: Added converter components for xenium data (PR #1).
* `convert/from_xenium_to_spatialexperiment`, `convert/from_cosmx_to_spatialexperiment`: Added converter components for Xenium or CosMx data to SpatialExperiment objects (PR #9).
* `workflows/qc/qc`: Added a pipeline for calculating qc metrics of spatial omics samples (PR #5).
* `workflows/multiomics/spatial_process_samples`: Added a pipeline to pre-process multiple spatial omics samples (PR #7).