vsh/openpipeline_spatial
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Build branch allow-compressed-output-bundles with version allow-compressed-output-bundles (56c413e)

Browse Source 
Build pipeline: openpipelines-bio.openpipeline-spatial.allow-compressed-ourtbs9

Source commit: 56c413edcb

Source message: Merge remote-tracking branch 'origin/main' into allow-compressed-output-bundles
This commit is contained in:
CI
2025-08-28 07:30:51 +00:00
parent cfb110c6bb
commit b27f3f2210
46 changed files with 97 additions and 55 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
target/executable/convert/from_cells2stats_to_h5mu/.config.vsh.yaml
View File

@@ -296,7 +296,7 @@ build_info:
output: "target/executable/convert/from_cells2stats_to_h5mu"
executable: "target/executable/convert/from_cells2stats_to_h5mu/from_cells2stats_to_h5mu"
viash_version: "0.9.4"
git_commit: "f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
git_commit: "56c413edcb8630cf4e6df89a39589c44dbb53d53"
git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
package_config:
name: "openpipeline_spatial"

4
target/executable/convert/from_cells2stats_to_h5mu/from_cells2stats_to_h5mu
View File

@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component convert from_cells2stats_to_h5mu"
LABEL org.opencontainers.image.created="2025-08-27T16:31:54Z"
LABEL org.opencontainers.image.created="2025-08-28T07:09:08Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
LABEL org.opencontainers.image.revision="f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
LABEL org.opencontainers.image.revision="56c413edcb8630cf4e6df89a39589c44dbb53d53"
LABEL org.opencontainers.image.version="allow-compressed-output-bundles"
VIASHDOCKER

2
target/executable/convert/from_cosmx_to_h5mu/.config.vsh.yaml
View File

@@ -231,7 +231,7 @@ build_info:
output: "target/executable/convert/from_cosmx_to_h5mu"
executable: "target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu"
viash_version: "0.9.4"
git_commit: "f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
git_commit: "56c413edcb8630cf4e6df89a39589c44dbb53d53"
git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
package_config:
name: "openpipeline_spatial"

4
target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu
View File

@@ -459,9 +459,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
LABEL org.opencontainers.image.description="Companion container for running component convert from_cosmx_to_h5mu"
LABEL org.opencontainers.image.created="2025-08-27T16:31:55Z"
LABEL org.opencontainers.image.created="2025-08-28T07:09:09Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
LABEL org.opencontainers.image.revision="f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
LABEL org.opencontainers.image.revision="56c413edcb8630cf4e6df89a39589c44dbb53d53"
LABEL org.opencontainers.image.version="allow-compressed-output-bundles"
VIASHDOCKER

2
target/executable/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml
View File

@@ -234,7 +234,7 @@ build_info:
output: "target/executable/convert/from_cosmx_to_spatialexperiment"
executable: "target/executable/convert/from_cosmx_to_spatialexperiment/from_cosmx_to_spatialexperiment"
viash_version: "0.9.4"
git_commit: "f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
git_commit: "56c413edcb8630cf4e6df89a39589c44dbb53d53"
git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
package_config:
name: "openpipeline_spatial"

4
target/executable/convert/from_cosmx_to_spatialexperiment/from_cosmx_to_spatialexperiment
View File

@@ -457,9 +457,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("BiocManager", quietly
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component convert from_cosmx_to_spatialexperiment"
LABEL org.opencontainers.image.created="2025-08-27T16:31:54Z"
LABEL org.opencontainers.image.created="2025-08-28T07:09:08Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
LABEL org.opencontainers.image.revision="f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
LABEL org.opencontainers.image.revision="56c413edcb8630cf4e6df89a39589c44dbb53d53"
LABEL org.opencontainers.image.version="allow-compressed-output-bundles"
VIASHDOCKER

2
target/executable/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml
View File

@@ -224,7 +224,7 @@ build_info:
output: "target/executable/convert/from_h5mu_to_spatialexperiment"
executable: "target/executable/convert/from_h5mu_to_spatialexperiment/from_h5mu_to_spatialexperiment"
viash_version: "0.9.4"
git_commit: "f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
git_commit: "56c413edcb8630cf4e6df89a39589c44dbb53d53"
git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
package_config:
name: "openpipeline_spatial"

4
target/executable/convert/from_h5mu_to_spatialexperiment/from_h5mu_to_spatialexperiment
View File

@@ -458,9 +458,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component convert from_h5mu_to_spatialexperiment"
LABEL org.opencontainers.image.created="2025-08-27T16:31:55Z"
LABEL org.opencontainers.image.created="2025-08-28T07:09:08Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
LABEL org.opencontainers.image.revision="f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
LABEL org.opencontainers.image.revision="56c413edcb8630cf4e6df89a39589c44dbb53d53"
LABEL org.opencontainers.image.version="allow-compressed-output-bundles"
VIASHDOCKER

2
target/executable/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
View File

@@ -220,7 +220,7 @@ build_info:
output: "target/executable/convert/from_spatialdata_to_h5mu"
executable: "target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu"
viash_version: "0.9.4"
git_commit: "f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
git_commit: "56c413edcb8630cf4e6df89a39589c44dbb53d53"
git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
package_config:
name: "openpipeline_spatial"

4
target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu
View File

@@ -459,9 +459,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
LABEL org.opencontainers.image.description="Companion container for running component convert from_spatialdata_to_h5mu"
LABEL org.opencontainers.image.created="2025-08-27T16:31:55Z"
LABEL org.opencontainers.image.created="2025-08-28T07:09:08Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
LABEL org.opencontainers.image.revision="f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
LABEL org.opencontainers.image.revision="56c413edcb8630cf4e6df89a39589c44dbb53d53"
LABEL org.opencontainers.image.version="allow-compressed-output-bundles"
VIASHDOCKER

2
target/executable/convert/from_xenium_to_h5mu/.config.vsh.yaml
View File

@@ -239,7 +239,7 @@ build_info:
output: "target/executable/convert/from_xenium_to_h5mu"
executable: "target/executable/convert/from_xenium_to_h5mu/from_xenium_to_h5mu"
viash_version: "0.9.4"
git_commit: "f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
git_commit: "56c413edcb8630cf4e6df89a39589c44dbb53d53"
git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
package_config:
name: "openpipeline_spatial"

4
target/executable/convert/from_xenium_to_h5mu/from_xenium_to_h5mu
View File

@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component convert from_xenium_to_h5mu"
LABEL org.opencontainers.image.created="2025-08-27T16:31:54Z"
LABEL org.opencontainers.image.created="2025-08-28T07:09:08Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
LABEL org.opencontainers.image.revision="f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
LABEL org.opencontainers.image.revision="56c413edcb8630cf4e6df89a39589c44dbb53d53"
LABEL org.opencontainers.image.version="allow-compressed-output-bundles"
VIASHDOCKER

2
target/executable/convert/from_xenium_to_spatialdata/.config.vsh.yaml
View File

@@ -320,7 +320,7 @@ build_info:
output: "target/executable/convert/from_xenium_to_spatialdata"
executable: "target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata"
viash_version: "0.9.4"
git_commit: "f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
git_commit: "56c413edcb8630cf4e6df89a39589c44dbb53d53"
git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
package_config:
name: "openpipeline_spatial"

4
target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata
View File

@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
LABEL org.opencontainers.image.description="Companion container for running component convert from_xenium_to_spatialdata"
LABEL org.opencontainers.image.created="2025-08-27T16:31:55Z"
LABEL org.opencontainers.image.created="2025-08-28T07:09:08Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
LABEL org.opencontainers.image.revision="f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
LABEL org.opencontainers.image.revision="56c413edcb8630cf4e6df89a39589c44dbb53d53"
LABEL org.opencontainers.image.version="allow-compressed-output-bundles"
VIASHDOCKER

2
target/executable/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml
View File

@@ -224,7 +224,7 @@ build_info:
output: "target/executable/convert/from_xenium_to_spatialexperiment"
executable: "target/executable/convert/from_xenium_to_spatialexperiment/from_xenium_to_spatialexperiment"
viash_version: "0.9.4"
git_commit: "f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
git_commit: "56c413edcb8630cf4e6df89a39589c44dbb53d53"
git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
package_config:
name: "openpipeline_spatial"

4
target/executable/convert/from_xenium_to_spatialexperiment/from_xenium_to_spatialexperiment
View File

@@ -457,9 +457,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("BiocManager", quietly
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component convert from_xenium_to_spatialexperiment"
LABEL org.opencontainers.image.created="2025-08-27T16:31:54Z"
LABEL org.opencontainers.image.created="2025-08-28T07:09:07Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
LABEL org.opencontainers.image.revision="f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
LABEL org.opencontainers.image.revision="56c413edcb8630cf4e6df89a39589c44dbb53d53"
LABEL org.opencontainers.image.version="allow-compressed-output-bundles"
VIASHDOCKER

2
target/executable/filter/subset_cosmx/.config.vsh.yaml
View File

@@ -227,7 +227,7 @@ build_info:
output: "target/executable/filter/subset_cosmx"
executable: "target/executable/filter/subset_cosmx/subset_cosmx"
viash_version: "0.9.4"
git_commit: "f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
git_commit: "56c413edcb8630cf4e6df89a39589c44dbb53d53"
git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
package_config:
name: "openpipeline_spatial"

4
target/executable/filter/subset_cosmx/subset_cosmx
View File

@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
LABEL org.opencontainers.image.description="Companion container for running component filter subset_cosmx"
LABEL org.opencontainers.image.created="2025-08-27T16:31:54Z"
LABEL org.opencontainers.image.created="2025-08-28T07:09:07Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
LABEL org.opencontainers.image.revision="f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
LABEL org.opencontainers.image.revision="56c413edcb8630cf4e6df89a39589c44dbb53d53"
LABEL org.opencontainers.image.version="allow-compressed-output-bundles"
VIASHDOCKER

2
target/executable/mapping/spaceranger_count/.config.vsh.yaml
View File

@@ -426,7 +426,7 @@ build_info:
output: "target/executable/mapping/spaceranger_count"
executable: "target/executable/mapping/spaceranger_count/spaceranger_count"
viash_version: "0.9.4"
git_commit: "f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
git_commit: "56c413edcb8630cf4e6df89a39589c44dbb53d53"
git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
package_config:
name: "openpipeline_spatial"

4
target/executable/mapping/spaceranger_count/spaceranger_count
View File

@@ -453,9 +453,9 @@ apt upgrade -y && apt install -y procps && rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.authors="Jakub Majercik"
LABEL org.opencontainers.image.description="Companion container for running component mapping spaceranger_count"
LABEL org.opencontainers.image.created="2025-08-27T16:31:54Z"
LABEL org.opencontainers.image.created="2025-08-28T07:09:07Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
LABEL org.opencontainers.image.revision="f951825e3f6f7d9ad09b4803220f5af99fe4ae14"
LABEL org.opencontainers.image.revision="56c413edcb8630cf4e6df89a39589c44dbb53d53"
LABEL org.opencontainers.image.version="allow-compressed-output-bundles"
VIASHDOCKER