Files

Build pipeline: openpipelines-bio.openpipeline-spatial.allow-compressed-ou2g89k

Source commit: b1bfccbd0e

Source message: wip

2025-08-27 11:21:44 +00:00

openpipeline_spatial 0.0.0

NEW FUNCTIONALITY

filter/subset_cosmx: Added a component to subset COSMX data (PR #3, PR #9).
convert/from_cosmx_to_h5mu: Added converter component for COSMX data (PR #3, PR #9).
mapping/spaceranger_count: Added a spaceranger count component (PR #2).
convert/from_spatialdata_to_h5mu, convert/from_xenium_to_spatialdata, convert/from_xenium_to_h5mu: Added converter components for xenium data (PR #1, #10).
convert/from_xenium_to_spatialexperiment, convert/from_cosmx_to_spatialexperiment: Added converter components for Xenium or CosMx data to SpatialExperiment objects (PR #9).
convert/from_cells2stats_to_h5mu: Added a component to convert data resulting from Aviti Teton sequencers processed by Cells2Stats into an H5MU file (PR #15).
workflows/qc/qc: Added a pipeline for calculating qc metrics of spatial omics samples (PR #5).
workflows/multiomics/spatial_process_samples: Added a pipeline to pre-process multiple spatial omics samples (PR #7).
convert/from_h5mu_to_spatialexperiment: Added converter component for H5MU data to SpatialExperiment objects (PR #15).