vsh/openpipeline_spatial
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openpipeline_spatial/CHANGELOG.md
CI 2275a63f70 Build branch build/main with version build_main (fab3d7d) 
Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-kc6j9

Source commit: fab3d7dbd8

Source message: deploy: 595b7db03ab2dd1bd0de16f217e3e634ef016c59
2025-08-21 09:14:14 +00:00

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openpipeline_spatial 0.0.0

NEW FUNCTIONALITY

  • filter/subset_cosmx: Added a component to subset COSMX data (PR #3, PR #9).

  • convert/from_cosmx_to_h5mu: Added converter component for COSMX data (PR #3, PR #9).

  • mapping/spaceranger_count: Added a spaceranger count component (PR #2).

  • convert/from_spatialdata_to_h5mu, convert/from_xenium_to_spatialdata, convert/from_xenium_to_h5mu: Added converter components for xenium data (PR #1, #10).

  • convert/from_xenium_to_spatialexperiment, convert/from_cosmx_to_spatialexperiment: Added converter components for Xenium or CosMx data to SpatialExperiment objects (PR #9).

  • convert/from_cells2stats_to_h5mu: Added a component to convert data resulting from Aviti Teton sequencers processed by Cells2Stats into an H5MU file (PR #15).

  • workflows/qc/qc: Added a pipeline for calculating qc metrics of spatial omics samples (PR #5).

  • workflows/multiomics/spatial_process_samples: Added a pipeline to pre-process multiple spatial omics samples (PR #7).

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