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openpipeline_spatial/src/workflows/utils/integration_tests.config
CI c6296af264 Build branch openpipeline_spatial/h5mu-to-seurat with version h5mu-to-seurat to openpipeline_spatial on branch h5mu-to-seurat (3b5314b)
Build pipeline: test-vsh-ci-build-template-qlrkg

Source commit: 3b5314b60d

Source message: update changelog
2025-10-20 09:17:46 +00:00

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profiles {
// detect tempdir
tempDir = java.nio.file.Paths.get(
System.getenv('NXF_TEMP') ?:
System.getenv('VIASH_TEMP') ?:
System.getenv('TEMPDIR') ?:
System.getenv('TMPDIR') ?:
'/tmp'
).toAbsolutePath()
mount_temp {
docker.temp = tempDir
podman.temp = tempDir
charliecloud.temp = tempDir
}
no_publish {
process {
withName: '.*' {
publishDir = [
enabled: false
]
}
}
}
docker {
docker.enabled = true
// docker.userEmulation = true
singularity.enabled = false
podman.enabled = false
shifter.enabled = false
charliecloud.enabled = false
}
}