CI
e64fc90ffc
Build pipeline: openpipelines-bio.openpipeline-spatial.downgrade-squidpy-wfb5p
Source commit: 803b041ef1
Source message: fixup
1.8 KiB
openpipeline_spatial x.x.x
MINOR CHANGES
-
Add
scopeto component and workflow configurations (PR #22). -
Bump version of spatialdata-io to 0.3.0 and spatialdata to 0.5.0. Pin version of pyarrow to 18.0.0 for compatibility (PR #24).
BUG FIXES
convert/from_cosmx_to_h5mu: Fixed an issue where parent directories of the cosmx output bundle were duplicated when readin in data (PR #25).
openpipeline_spatial 0.1.1
MINOR CHANGES
- Add a README (PR #21).
NEW FUNCTIONALITY
convert: Updated multiple components to accept spatial output bundles in .zip format (for CosMx, Xenium and Aviti) as input (PR #19, PR #20).
openpipeline_spatial 0.1.0
NEW FUNCTIONALITY
-
filter/subset_cosmx: Added a component to subset COSMX data (PR #3, PR #9). -
convert/from_cosmx_to_h5mu: Added converter component for COSMX data (PR #3, PR #9). -
mapping/spaceranger_count: Added a spaceranger count component (PR #2). -
convert/from_spatialdata_to_h5mu,convert/from_xenium_to_spatialdata,convert/from_xenium_to_h5mu: Added converter components for xenium data (PR #1, #10). -
convert/from_xenium_to_spatialexperiment,convert/from_cosmx_to_spatialexperiment: Added converter components for Xenium or CosMx data to SpatialExperiment objects (PR #9). -
convert/from_cells2stats_to_h5mu: Added a component to convert data resulting from Aviti Teton sequencers processed by Cells2Stats into an H5MU file (PR #15). -
workflows/qc/qc: Added a pipeline for calculating qc metrics of spatial omics samples (PR #5). -
workflows/multiomics/spatial_process_samples: Added a pipeline to pre-process multiple spatial omics samples (PR #7). -
convert/from_h5mu_to_spatialexperiment: Added converter component for H5MU data to SpatialExperiment objects (PR #15).