CI
c0bd36f2eb
Build pipeline: viash-hub.playground.main-n876l
Source commit: 32dc80723a
Source message: Emtpy commit
54 lines
973 B
YAML
54 lines
973 B
YAML
name: mapping_and_qc
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description: Run STAR and QC
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argument_groups:
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- name: Input arguments
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arguments:
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- name: --input_r1
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type: file
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direction: input
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required: true
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- name: --input_r2
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type: file
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direction: input
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required: true
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- name: --reference
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type: file
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required: true
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- name: Output arguments
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arguments:
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- name: --multiqc_output
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type: file
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example: multiqc.html
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direction: output
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required: true
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resources:
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- type: nextflow_script
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path: main.nf
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entrypoint: run_wf
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dependencies:
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- name: cutadapt
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repository: bb
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- name: falco
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repository: bb
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- name: multiqc
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repository: bb
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- name: star/star_align_reads
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repository: bb
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- name: samtools/samtools_stats
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repository: bb
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repositories:
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- name: bb
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type: vsh
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repo: vsh/biobox
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tag: main
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runners:
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- type: nextflow
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engines:
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- type: native
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