param_list:
  - id: WT_REP1
    fastq_1:
      - https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357070_1.fastq.gz
      - https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357071_1.fastq.gz
    fastq_2:
      - https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357070_2.fastq.gz
      - https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357071_2.fastq.gz
    strandedness: reverse
  - id: WT_REP2
    fastq_1:
      - https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357072_1.fastq.gz
    fastq_2:
      - https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357072_2.fastq.gz
    strandedness: reverse
  - id: RAP1_IAA_30M_REP1
    fastq_1:
      - https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357076_1.fastq.gz
    fastq_2:
      - https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357076_2.fastq.gz
    strandedness: reverse
  - id: RAP1_UNINDUCED_REP1
    fastq_1:
      - https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357073_1.fastq.gz
    strandedness: reverse
  - id: RAP1_UNINDUCED_REP2
    fastq_1:
      - https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357074_1.fastq.gz
      - https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357075_1.fastq.gz
    strandedness: reverse

fasta: https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/reference/genome.fasta
gtf: https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/reference/genes.gtf.gz
additional_fasta: https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/reference/gfp.fa.gz
transcript_fasta: https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/reference/transcriptome.fasta
bbsplit_fasta_list: https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/reference/bbsplit_fasta_list.txt
salmon_index: https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/reference/salmon.tar.gz
skip_bbsplit: true
multiqc_custom_config: https://raw.githubusercontent.com/viash-hub/rnaseq/refs/heads/main/src/assets/multiqc_config.yml
multiqc_methods_description: https://raw.githubusercontent.com/viash-hub/rnaseq/refs/heads/main/src/assets/methods_description_template.yml
