_viash.yaml

name: rnaseq

viash_version: 0.9.0

source: src
target: target

info:
  test_resources:
    - path: gs://viash-hub-test-data/rnaseq/v1
      dest: testData

config_mods: |
  .requirements.commands := ['ps']
  .runners[.type == 'nextflow'].directives.tag := '$id'

repositories:
  - name: biobox
    type: vsh
    repo: vsh/biobox
    tag: main
  - name: craftbox
    type: vsh
    repo: craftbox
    tag: v0.1.0
Build branch main with version main (05d48ac) Build pipeline: viash-hub.rnaseq.main-c7sdt Source commit: https://github.com/viash-hub/rnaseq/commit/05d48ac2f802e6510893b0966727b56adf2d5bf7 Source message: Multiple fixes (#26) * unset argument if not paired * fix argument name * add count_read_pairs argument * output star log * move biotypes header file into multiqc_custom_biotype component * move deseq2 header files into deseq2_qc component * update output defaults * use biobox main * add parameters to example * update component * update component * ribo database processing moved to workflow * clean code, remove unused arguments 2024-10-25 09:08:46 +00:00			`name: rnaseq`

Build branch main with version main (1e1ffb3) Build pipeline: vsh-ci-dev-jsbwk Source commit: https://github.com/viash-hub/rnaseq/commit/1e1ffb315fefec05db2ee0c62e1c98ce4b49929c Source message: Merge pull request #17 from viash-hub/add_biobox_modules - Migrate a number of components to biobox - Fix tests - Reduce size of test resources - Prepare for Viash Hub 2024-09-13 07:41:13 +00:00			`viash_version: 0.9.0`

			`source: src`
			`target: target`

			`info:`
			`test_resources:`
			`- path: gs://viash-hub-test-data/rnaseq/v1`
			`dest: testData`

			`config_mods: \|`
			`.requirements.commands := ['ps']`
			`.runners[.type == 'nextflow'].directives.tag := '$id'`
Build branch main with version main (64aad6a) Build pipeline: viash-hub.rnaseq.main-4gbdz Source commit: https://github.com/viash-hub/rnaseq/commit/64aad6a006818388eceffe024b1701b3eae06bee Source message: Merge pull request #22 from viash-hub/define_repositories_in_package_config define dependency repositories once in the package config 2024-09-14 09:49:51 +00:00
			`repositories:`
			`- name: biobox`
			`type: vsh`
			`repo: vsh/biobox`
Build branch main with version main (05d48ac) Build pipeline: viash-hub.rnaseq.main-c7sdt Source commit: https://github.com/viash-hub/rnaseq/commit/05d48ac2f802e6510893b0966727b56adf2d5bf7 Source message: Multiple fixes (#26) * unset argument if not paired * fix argument name * add count_read_pairs argument * output star log * move biotypes header file into multiqc_custom_biotype component * move deseq2 header files into deseq2_qc component * update output defaults * use biobox main * add parameters to example * update component * update component * ribo database processing moved to workflow * clean code, remove unused arguments 2024-10-25 09:08:46 +00:00			`tag: main`
Build branch main with version main (64aad6a) Build pipeline: viash-hub.rnaseq.main-4gbdz Source commit: https://github.com/viash-hub/rnaseq/commit/64aad6a006818388eceffe024b1701b3eae06bee Source message: Merge pull request #22 from viash-hub/define_repositories_in_package_config define dependency repositories once in the package config 2024-09-14 09:49:51 +00:00			`- name: craftbox`
			`type: vsh`
			`repo: craftbox`
			`tag: v0.1.0`