20 lines
565 B
Bash
20 lines
565 B
Bash
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#!/bin/bash
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set -eo pipefail
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prefix=$(openssl rand -hex 8)
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junction_saturation.py \
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-i $par_input \
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-r $par_refgene \
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-o $prefix \
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-l $par_sampling_percentile_lower_bound \
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-u $par_sampling_percentile_upper_bound \
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-s $par_sampling_percentile_step \
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-m $par_min_intron \
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-v $par_min_splice_read \
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-q $par_map_qual
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[[ -f "$prefix.junctionSaturation_plot.pdf" ]] && mv $prefix.junctionSaturation_plot.pdf $par_output_plot
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[[ -f "$prefix.junctionSaturation_plot.r" ]] && mv $prefix.junctionSaturation_plot.r $par_output_plot_r
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