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Build branch multiple_fixes with version multiple_fixes (b291665)

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Build pipeline: viash-hub.rnaseq.multiple-fixes-kj62j

Source commit: b291665ddc

Source message: minor changes
This commit is contained in:
CI
2024-09-24 10:36:19 +00:00
parent 29c8cdb0a2
commit 0e55094fd4
209 changed files with 15628 additions and 2971 deletions
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4
target/executable/prepare_multiqc_input/.config.vsh.yaml
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@@ -409,8 +409,8 @@ build_info:
output: "target/executable/prepare_multiqc_input"
executable: "target/executable/prepare_multiqc_input/prepare_multiqc_input"
viash_version: "0.9.0"
git_commit: "de0a35359a44844ab9f5f99a38a4d13a457b05a5"
git_remote: "https://x-access-token:ghs_WsTMx5jJ0pjvozwYVrQC02O3bkQSqz3BBgOJ@github.com/viash-hub/rnaseq"
git_commit: "b291665ddc01d0f8072d9d3d7b4aa9932afb84df"
git_remote: "https://x-access-token:ghs_qzx8ub2s5n4pMItYHe6AI1j20ftDAd0MJkoX@github.com/viash-hub/rnaseq"
package_config:
version: "multiple_fixes"
info:

11
target/executable/prepare_multiqc_input/prepare_multiqc_input
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@@ -557,9 +557,9 @@ function ViashDockerfile {
FROM ubuntu:22.04
ENTRYPOINT []
LABEL org.opencontainers.image.description="Companion container for running component prepare_multiqc_input"
LABEL org.opencontainers.image.created="2024-09-23T13:50:05Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_WsTMx5jJ0pjvozwYVrQC02O3bkQSqz3BBgOJ@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="de0a35359a44844ab9f5f99a38a4d13a457b05a5"
LABEL org.opencontainers.image.created="2024-09-24T10:12:55Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_qzx8ub2s5n4pMItYHe6AI1j20ftDAd0MJkoX@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="b291665ddc01d0f8072d9d3d7b4aa9932afb84df"
LABEL org.opencontainers.image.version="multiple_fixes"
VIASHDOCKER
@@ -2285,7 +2285,8 @@ IFS="," read -ra star_multiqc <<< \$par_star_multiqc && for file in "\${star_mul
IFS="," read -ra rsem_multiqc <<< \$par_rsem_multiqc && for file in "\${rsem_multiqc[@]}"; do [ -e "\$file" ] && cp -r "\$file" "\$par_output/"; done
IFS="," read -ra salmon_multiqc <<< \$par_salmon_multiqc && for file in "\${salmon_multiqc[@]}"; do [ -e "\$file" ] && cp -r "\$file" "\$par_output/"; done
# TODO: Fetch Salmon meta info
# IFS="," read -ra salmon_multiqc <<< \$par_salmon_multiqc && for file in "\${salmon_multiqc[@]}"; do [ -e "\$file" ] && cp -r "\$file" "\$par_output/"; done
IFS="," read -ra samtools_stats <<< \$par_samtools_stats && for file in "\${samtools_stats[@]}"; do [ -e "\$file" ] && cp -r "\$file" \$par_output/; done
@@ -2300,7 +2301,7 @@ IFS="," read -ra pseudo_multiqc <<< \$par_pseudo_multiqc && for file in "\${pseu
IFS="," read -ra featurecounts_multiqc <<< \$par_featurecounts_multiqc && for file in "\${featurecounts_multiqc[@]}"; do [ -e "\$file" ] && cp -r "\$file" "\$par_output/"; done
IFS="," read -ra featurecounts_rrna_multiqc <<< \$par_featurecounts_rrna_multiqc&& for file in "\${featurecounts_rrna_multiqc[@]}"; do [ -e "\$file" ] && cp -r "\$file" "\$par_output/"; done
IFS="," read -ra featurecounts_rrna_multiqc <<< \$par_featurecounts_rrna_multiqc && for file in "\${featurecounts_rrna_multiqc[@]}"; do [ -e "\$file" ] && cp -r "\$file" "\$par_output/"; done
[ -e "\$par_aligner_pca_multiqc" ] && cp -r "\$par_aligner_pca_multiqc" "\$par_output/"