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Build branch main with version main (a04f9ba)

Browse Source 
Build pipeline: viash-hub.rnaseq.main-xf2ql

Source commit: a04f9bab8a

Source message: avoid generating STAR index if alignment is skipped
This commit is contained in:
CI
2024-11-13 12:53:08 +00:00
parent bc17b94cd5
commit 2d86d22f22
194 changed files with 473 additions and 422 deletions
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4
target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml
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@@ -163,8 +163,8 @@ build_info:
output: "target/executable/rseqc/rseqc_bamstat"
executable: "target/executable/rseqc/rseqc_bamstat/rseqc_bamstat"
viash_version: "0.9.0"
git_commit: "5fbd530a7cf631bcc2930747d4712993ee19f07a"
git_remote: "https://x-access-token:ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_bamstat/rseqc_bamstat
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@@ -477,9 +477,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_bamstat"
LABEL org.opencontainers.image.created="2024-11-13T10:13:18Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="5fbd530a7cf631bcc2930747d4712993ee19f07a"
LABEL org.opencontainers.image.created="2024-11-13T12:42:20Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml
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@@ -186,8 +186,8 @@ build_info:
output: "target/executable/rseqc/rseqc_inferexperiment"
executable: "target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment"
viash_version: "0.9.0"
git_commit: "5fbd530a7cf631bcc2930747d4712993ee19f07a"
git_remote: "https://x-access-token:ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment
View File

@@ -487,9 +487,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inferexperiment"
LABEL org.opencontainers.image.created="2024-11-13T10:13:19Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="5fbd530a7cf631bcc2930747d4712993ee19f07a"
LABEL org.opencontainers.image.created="2024-11-13T12:42:22Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_innerdistance/.config.vsh.yaml
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@@ -272,8 +272,8 @@ build_info:
output: "target/executable/rseqc/rseqc_innerdistance"
executable: "target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance"
viash_version: "0.9.0"
git_commit: "5fbd530a7cf631bcc2930747d4712993ee19f07a"
git_remote: "https://x-access-token:ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance
View File

@@ -529,9 +529,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_innerdistance"
LABEL org.opencontainers.image.created="2024-11-13T10:13:17Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="5fbd530a7cf631bcc2930747d4712993ee19f07a"
LABEL org.opencontainers.image.created="2024-11-13T12:42:20Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_junctionannotation/.config.vsh.yaml
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@@ -260,8 +260,8 @@ build_info:
output: "target/executable/rseqc/rseqc_junctionannotation"
executable: "target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation"
viash_version: "0.9.0"
git_commit: "5fbd530a7cf631bcc2930747d4712993ee19f07a"
git_remote: "https://x-access-token:ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation
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@@ -519,9 +519,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_junctionannotation"
LABEL org.opencontainers.image.created="2024-11-13T10:13:17Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="5fbd530a7cf631bcc2930747d4712993ee19f07a"
LABEL org.opencontainers.image.created="2024-11-13T12:42:20Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_junctionsaturation/.config.vsh.yaml
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@@ -249,8 +249,8 @@ build_info:
output: "target/executable/rseqc/rseqc_junctionsaturation"
executable: "target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation"
viash_version: "0.9.0"
git_commit: "5fbd530a7cf631bcc2930747d4712993ee19f07a"
git_remote: "https://x-access-token:ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation
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@@ -522,9 +522,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_junctionsaturation"
LABEL org.opencontainers.image.created="2024-11-13T10:13:19Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="5fbd530a7cf631bcc2930747d4712993ee19f07a"
LABEL org.opencontainers.image.created="2024-11-13T12:42:21Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_readdistribution/.config.vsh.yaml
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@@ -162,8 +162,8 @@ build_info:
output: "target/executable/rseqc/rseqc_readdistribution"
executable: "target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution"
viash_version: "0.9.0"
git_commit: "5fbd530a7cf631bcc2930747d4712993ee19f07a"
git_remote: "https://x-access-token:ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution
View File

@@ -474,9 +474,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_readdistribution"
LABEL org.opencontainers.image.created="2024-11-13T10:13:18Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="5fbd530a7cf631bcc2930747d4712993ee19f07a"
LABEL org.opencontainers.image.created="2024-11-13T12:42:21Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_readduplication/.config.vsh.yaml
View File

@@ -211,8 +211,8 @@ build_info:
output: "target/executable/rseqc/rseqc_readduplication"
executable: "target/executable/rseqc/rseqc_readduplication/rseqc_readduplication"
viash_version: "0.9.0"
git_commit: "5fbd530a7cf631bcc2930747d4712993ee19f07a"
git_remote: "https://x-access-token:ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_readduplication/rseqc_readduplication
View File

@@ -499,9 +499,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_readduplication"
LABEL org.opencontainers.image.created="2024-11-13T10:13:17Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="5fbd530a7cf631bcc2930747d4712993ee19f07a"
LABEL org.opencontainers.image.created="2024-11-13T12:42:19Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_tin/.config.vsh.yaml
View File

@@ -214,8 +214,8 @@ build_info:
output: "target/executable/rseqc/rseqc_tin"
executable: "target/executable/rseqc/rseqc_tin/rseqc_tin"
viash_version: "0.9.0"
git_commit: "5fbd530a7cf631bcc2930747d4712993ee19f07a"
git_remote: "https://x-access-token:ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_tin/rseqc_tin
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@@ -501,9 +501,9 @@ RUN apt-get update && \
RUN pip3 install RSeQC
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_tin"
LABEL org.opencontainers.image.created="2024-11-13T10:13:18Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_2KJ9dSEPJriSLryPjkD8jGq8HeUsFi4f32RI@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="5fbd530a7cf631bcc2930747d4712993ee19f07a"
LABEL org.opencontainers.image.created="2024-11-13T12:42:21Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER