diff --git a/_viash.yaml b/_viash.yaml index 11dffa4..121078b 100644 --- a/_viash.yaml +++ b/_viash.yaml @@ -1,4 +1,5 @@ viash_version: 0.9.0 +version: v0.1.0 source: src target: target diff --git a/target/executable/bbmap_bbsplit/.config.vsh.yaml b/target/executable/bbmap_bbsplit/.config.vsh.yaml index 9678444..c58bacd 100644 --- a/target/executable/bbmap_bbsplit/.config.vsh.yaml +++ b/target/executable/bbmap_bbsplit/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "bbmap_bbsplit" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -219,7 +219,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -238,10 +238,10 @@ build_info: output: "target/executable/bbmap_bbsplit" executable: "target/executable/bbmap_bbsplit/bbmap_bbsplit" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -263,5 +263,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/bbmap_bbsplit/bbmap_bbsplit b/target/executable/bbmap_bbsplit/bbmap_bbsplit index d05b15c..b772a2b 100755 --- a/target/executable/bbmap_bbsplit/bbmap_bbsplit +++ b/target/executable/bbmap_bbsplit/bbmap_bbsplit @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# bbmap_bbsplit v0.1 +# bbmap_bbsplit v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "bbmap_bbsplit v0.1" + echo "bbmap_bbsplit v0.1.0" echo "" echo "Split sequencing reads by mapping them to multiple references simultaneously." echo "" @@ -506,10 +506,10 @@ tar xzf BBMap_39.01.tar.gz && \ cp -r bbmap/* /usr/local/bin LABEL org.opencontainers.image.description="Companion container for running component bbmap_bbsplit" -LABEL org.opencontainers.image.created="2024-10-04T10:28:14Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:39Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -645,7 +645,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "bbmap_bbsplit v0.1" + echo "bbmap_bbsplit v0.1.0" exit ;; --id) @@ -852,7 +852,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/bbmap_bbsplit:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/bbmap_bbsplit:v0.1.0' fi # print dockerfile diff --git a/target/executable/bedtools_genomecov/.config.vsh.yaml b/target/executable/bedtools_genomecov/.config.vsh.yaml index ac6a238..d812d3e 100644 --- a/target/executable/bedtools_genomecov/.config.vsh.yaml +++ b/target/executable/bedtools_genomecov/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "bedtools_genomecov" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -159,7 +159,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -178,10 +178,10 @@ build_info: output: "target/executable/bedtools_genomecov" executable: "target/executable/bedtools_genomecov/bedtools_genomecov" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -203,5 +203,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/bedtools_genomecov/bedtools_genomecov b/target/executable/bedtools_genomecov/bedtools_genomecov index 0f46b8a..95fe81a 100755 --- a/target/executable/bedtools_genomecov/bedtools_genomecov +++ b/target/executable/bedtools_genomecov/bedtools_genomecov @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# bedtools_genomecov v0.1 +# bedtools_genomecov v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "bedtools_genomecov v0.1" + echo "bedtools_genomecov v0.1.0" echo "" echo "Compute BEDGRAPH (-bg) summaries of feature coverage" echo "" @@ -481,10 +481,10 @@ mv bedtools.static /usr/local/bin/bedtools && \ chmod a+x /usr/local/bin/bedtools LABEL org.opencontainers.image.description="Companion container for running component bedtools_genomecov" -LABEL org.opencontainers.image.created="2024-10-04T10:28:15Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:40Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -620,7 +620,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "bedtools_genomecov v0.1" + echo "bedtools_genomecov v0.1.0" exit ;; --strandedness) @@ -766,7 +766,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/bedtools_genomecov:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/bedtools_genomecov:v0.1.0' fi # print dockerfile diff --git a/target/executable/cat_additional_fasta/.config.vsh.yaml b/target/executable/cat_additional_fasta/.config.vsh.yaml index cb329a5..562d475 100644 --- a/target/executable/cat_additional_fasta/.config.vsh.yaml +++ b/target/executable/cat_additional_fasta/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "cat_additional_fasta" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -169,7 +169,7 @@ engines: id: "docker" image: "python" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" entrypoint: [] cmd: null @@ -182,10 +182,10 @@ build_info: output: "target/executable/cat_additional_fasta" executable: "target/executable/cat_additional_fasta/cat_additional_fasta" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -207,5 +207,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/cat_additional_fasta/cat_additional_fasta b/target/executable/cat_additional_fasta/cat_additional_fasta index 3be27fd..67f75fa 100755 --- a/target/executable/cat_additional_fasta/cat_additional_fasta +++ b/target/executable/cat_additional_fasta/cat_additional_fasta @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# cat_additional_fasta v0.1 +# cat_additional_fasta v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "cat_additional_fasta v0.1" + echo "cat_additional_fasta v0.1.0" echo "" echo "Concatenate addional fasta file to reference FASTA and GTF files." echo "" @@ -480,10 +480,10 @@ function ViashDockerfile { FROM python:latest ENTRYPOINT [] LABEL org.opencontainers.image.description="Companion container for running component cat_additional_fasta" -LABEL org.opencontainers.image.created="2024-10-04T10:28:23Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:48Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -619,7 +619,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "cat_additional_fasta v0.1" + echo "cat_additional_fasta v0.1.0" exit ;; --fasta) @@ -776,7 +776,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/cat_additional_fasta:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/cat_additional_fasta:v0.1.0' fi # print dockerfile diff --git a/target/executable/cat_fastq/.config.vsh.yaml b/target/executable/cat_fastq/.config.vsh.yaml index 3cfa9ad..49a1a7c 100644 --- a/target/executable/cat_fastq/.config.vsh.yaml +++ b/target/executable/cat_fastq/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "cat_fastq" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -156,7 +156,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" entrypoint: [] cmd: null @@ -169,10 +169,10 @@ build_info: output: "target/executable/cat_fastq" executable: "target/executable/cat_fastq/cat_fastq" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -194,5 +194,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/cat_fastq/cat_fastq b/target/executable/cat_fastq/cat_fastq index 3eb935f..d8deaa7 100755 --- a/target/executable/cat_fastq/cat_fastq +++ b/target/executable/cat_fastq/cat_fastq @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# cat_fastq v0.1 +# cat_fastq v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "cat_fastq v0.1" + echo "cat_fastq v0.1.0" echo "" echo "Concatenate multiple fastq files" echo "" @@ -472,10 +472,10 @@ function ViashDockerfile { FROM ubuntu:22.04 ENTRYPOINT [] LABEL org.opencontainers.image.description="Companion container for running component cat_fastq" -LABEL org.opencontainers.image.created="2024-10-04T10:28:23Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:48Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -611,7 +611,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "cat_fastq v0.1" + echo "cat_fastq v0.1.0" exit ;; --read_1) @@ -758,7 +758,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/cat_fastq:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/cat_fastq:v0.1.0' fi # print dockerfile diff --git a/target/executable/deseq2_qc/.config.vsh.yaml b/target/executable/deseq2_qc/.config.vsh.yaml index e6a69af..9e02358 100644 --- a/target/executable/deseq2_qc/.config.vsh.yaml +++ b/target/executable/deseq2_qc/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "deseq2_qc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "input" arguments: @@ -207,7 +207,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -239,10 +239,10 @@ build_info: output: "target/executable/deseq2_qc" executable: "target/executable/deseq2_qc/deseq2_qc" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -264,5 +264,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/deseq2_qc/deseq2_qc b/target/executable/deseq2_qc/deseq2_qc index 3dd4600..46469d5 100755 --- a/target/executable/deseq2_qc/deseq2_qc +++ b/target/executable/deseq2_qc/deseq2_qc @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# deseq2_qc v0.1 +# deseq2_qc v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "deseq2_qc v0.1" + echo "deseq2_qc v0.1.0" echo "" echo "run deseq2, perform pca, generate heatmaps and scatterplots for samples in the" echo "counts files" @@ -502,10 +502,10 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag Rscript -e 'remotes::install_url(c("https://cran.r-project.org/src/contrib/Archive/matrixStats/matrixStats_1.1.0.tar.gz"), repos = "https://cran.rstudio.com")' LABEL org.opencontainers.image.description="Companion container for running component deseq2_qc" -LABEL org.opencontainers.image.created="2024-10-04T10:28:33Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:58Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -641,7 +641,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "deseq2_qc v0.1" + echo "deseq2_qc v0.1.0" exit ;; --counts) @@ -831,7 +831,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/deseq2_qc:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/deseq2_qc:v0.1.0' fi # print dockerfile diff --git a/target/executable/dupradar/.config.vsh.yaml b/target/executable/dupradar/.config.vsh.yaml index b0f3e54..7ba30b8 100644 --- a/target/executable/dupradar/.config.vsh.yaml +++ b/target/executable/dupradar/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "dupradar" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -244,7 +244,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -266,10 +266,10 @@ build_info: output: "target/executable/dupradar" executable: "target/executable/dupradar/dupradar" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -291,5 +291,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/dupradar/dupradar b/target/executable/dupradar/dupradar index a25fd4b..b5ef31a 100755 --- a/target/executable/dupradar/dupradar +++ b/target/executable/dupradar/dupradar @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# dupradar v0.1 +# dupradar v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "dupradar v0.1" + echo "dupradar v0.1.0" echo "" echo "Assessment of duplication rates in RNA-Seq datasets" echo "" @@ -520,10 +520,10 @@ RUN Rscript -e 'if (!requireNamespace("BiocManager", quietly = TRUE)) install.pa Rscript -e 'if (!requireNamespace("dupRadar", quietly = TRUE)) BiocManager::install("dupRadar")' LABEL org.opencontainers.image.description="Companion container for running component dupradar" -LABEL org.opencontainers.image.created="2024-10-04T10:28:24Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:49Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -659,7 +659,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "dupradar v0.1" + echo "dupradar v0.1.0" exit ;; --id) @@ -882,7 +882,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/dupradar:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/dupradar:v0.1.0' fi # print dockerfile diff --git a/target/executable/fastqc/.config.vsh.yaml b/target/executable/fastqc/.config.vsh.yaml index 2f1c577..3243d7b 100644 --- a/target/executable/fastqc/.config.vsh.yaml +++ b/target/executable/fastqc/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "fastqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -180,7 +180,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -198,10 +198,10 @@ build_info: output: "target/executable/fastqc" executable: "target/executable/fastqc/fastqc" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -223,5 +223,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/fastqc/fastqc b/target/executable/fastqc/fastqc index 52e5026..14b3083 100755 --- a/target/executable/fastqc/fastqc +++ b/target/executable/fastqc/fastqc @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# fastqc v0.1 +# fastqc v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "fastqc v0.1" + echo "fastqc v0.1.0" echo "" echo "Fastqc component, please see" echo "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/. This component can" @@ -490,10 +490,10 @@ RUN apt-get update && \ rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.description="Companion container for running component fastqc" -LABEL org.opencontainers.image.created="2024-10-04T10:28:16Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:41Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -629,7 +629,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "fastqc v0.1" + echo "fastqc v0.1.0" exit ;; --paired) @@ -792,7 +792,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/fastqc:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/fastqc:v0.1.0' fi # print dockerfile diff --git a/target/executable/fq_subsample/.config.vsh.yaml b/target/executable/fq_subsample/.config.vsh.yaml index fb68bd7..43fc2ba 100644 --- a/target/executable/fq_subsample/.config.vsh.yaml +++ b/target/executable/fq_subsample/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "fq_subsample" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -153,7 +153,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -177,10 +177,10 @@ build_info: output: "target/executable/fq_subsample" executable: "target/executable/fq_subsample/fq_subsample" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -202,5 +202,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/fq_subsample/fq_subsample b/target/executable/fq_subsample/fq_subsample index 7a396e3..ea89340 100755 --- a/target/executable/fq_subsample/fq_subsample +++ b/target/executable/fq_subsample/fq_subsample @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# fq_subsample v0.1 +# fq_subsample v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "fq_subsample v0.1" + echo "fq_subsample v0.1.0" echo "" echo "fq subsample outputs a subset of records from single or paired FASTQ files. This" echo "requires a seed (--seed) to be set in ext.args" @@ -485,10 +485,10 @@ cargo install --locked --path . && \ mv /usr/local/fq/target/release/fq /usr/local/bin/ LABEL org.opencontainers.image.description="Companion container for running component fq_subsample" -LABEL org.opencontainers.image.created="2024-10-04T10:28:16Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:41Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -624,7 +624,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "fq_subsample v0.1" + echo "fq_subsample v0.1.0" exit ;; --input) @@ -765,7 +765,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/fq_subsample:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/fq_subsample:v0.1.0' fi # print dockerfile diff --git a/target/executable/getchromsizes/.config.vsh.yaml b/target/executable/getchromsizes/.config.vsh.yaml index 7ad358c..0ab5de3 100644 --- a/target/executable/getchromsizes/.config.vsh.yaml +++ b/target/executable/getchromsizes/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "getchromsizes" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -146,7 +146,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -167,10 +167,10 @@ build_info: output: "target/executable/getchromsizes" executable: "target/executable/getchromsizes/getchromsizes" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -192,5 +192,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/getchromsizes/getchromsizes b/target/executable/getchromsizes/getchromsizes index 3045941..9b49cf8 100755 --- a/target/executable/getchromsizes/getchromsizes +++ b/target/executable/getchromsizes/getchromsizes @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# getchromsizes v0.1 +# getchromsizes v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "getchromsizes v0.1" + echo "getchromsizes v0.1.0" echo "" echo "Generates a FASTA file of chromosome sizes and a fasta index file." echo "" @@ -480,10 +480,10 @@ make && \ make install LABEL org.opencontainers.image.description="Companion container for running component getchromsizes" -LABEL org.opencontainers.image.created="2024-10-04T10:28:17Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:41Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -619,7 +619,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "getchromsizes v0.1" + echo "getchromsizes v0.1.0" exit ;; --fasta) @@ -754,7 +754,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/getchromsizes:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/getchromsizes:v0.1.0' fi # print dockerfile diff --git a/target/executable/gtf2bed/.config.vsh.yaml b/target/executable/gtf2bed/.config.vsh.yaml index 3d645f5..db3ec69 100644 --- a/target/executable/gtf2bed/.config.vsh.yaml +++ b/target/executable/gtf2bed/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "gtf2bed" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -127,7 +127,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -145,10 +145,10 @@ build_info: output: "target/executable/gtf2bed" executable: "target/executable/gtf2bed/gtf2bed" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -170,5 +170,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/gtf2bed/gtf2bed b/target/executable/gtf2bed/gtf2bed index 5239c3a..e2f9da8 100755 --- a/target/executable/gtf2bed/gtf2bed +++ b/target/executable/gtf2bed/gtf2bed @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# gtf2bed v0.1 +# gtf2bed v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "gtf2bed v0.1" + echo "gtf2bed v0.1.0" echo "" echo "Create BED annotation file from GTF." echo "" @@ -466,10 +466,10 @@ RUN apt-get update && \ rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.description="Companion container for running component gtf2bed" -LABEL org.opencontainers.image.created="2024-10-04T10:28:29Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:54Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -605,7 +605,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "gtf2bed v0.1" + echo "gtf2bed v0.1.0" exit ;; --gtf) @@ -718,7 +718,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/gtf2bed:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/gtf2bed:v0.1.0' fi # print dockerfile diff --git a/target/executable/gtf_filter/.config.vsh.yaml b/target/executable/gtf_filter/.config.vsh.yaml index af9df6d..f8b255b 100644 --- a/target/executable/gtf_filter/.config.vsh.yaml +++ b/target/executable/gtf_filter/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "gtf_filter" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -142,7 +142,7 @@ engines: id: "docker" image: "python" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" entrypoint: [] cmd: null @@ -155,10 +155,10 @@ build_info: output: "target/executable/gtf_filter" executable: "target/executable/gtf_filter/gtf_filter" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -180,5 +180,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/gtf_filter/gtf_filter b/target/executable/gtf_filter/gtf_filter index 8b62c83..61b6631 100755 --- a/target/executable/gtf_filter/gtf_filter +++ b/target/executable/gtf_filter/gtf_filter @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# gtf_filter v0.1 +# gtf_filter v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "gtf_filter v0.1" + echo "gtf_filter v0.1.0" echo "" echo "Filters a GTF file based on sequence names in a FASTA file." echo "" @@ -470,10 +470,10 @@ function ViashDockerfile { FROM python:latest ENTRYPOINT [] LABEL org.opencontainers.image.description="Companion container for running component gtf_filter" -LABEL org.opencontainers.image.created="2024-10-04T10:28:32Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:57Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -609,7 +609,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "gtf_filter v0.1" + echo "gtf_filter v0.1.0" exit ;; --fasta) @@ -738,7 +738,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/gtf_filter:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/gtf_filter:v0.1.0' fi # print dockerfile diff --git a/target/executable/gunzip/.config.vsh.yaml b/target/executable/gunzip/.config.vsh.yaml index ff87f4f..c000ae3 100644 --- a/target/executable/gunzip/.config.vsh.yaml +++ b/target/executable/gunzip/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "gunzip" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -126,7 +126,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -144,10 +144,10 @@ build_info: output: "target/executable/gunzip" executable: "target/executable/gunzip/gunzip" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -169,5 +169,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/gunzip/gunzip b/target/executable/gunzip/gunzip index 186507a..2b0d442 100755 --- a/target/executable/gunzip/gunzip +++ b/target/executable/gunzip/gunzip @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# gunzip v0.1 +# gunzip v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "gunzip v0.1" + echo "gunzip v0.1.0" echo "" echo "Compress or uncompress a file or list of files." echo "" @@ -466,10 +466,10 @@ RUN apt-get update && \ rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.description="Companion container for running component gunzip" -LABEL org.opencontainers.image.created="2024-10-04T10:28:17Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:42Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -605,7 +605,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "gunzip v0.1" + echo "gunzip v0.1.0" exit ;; --input) @@ -718,7 +718,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/gunzip:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/gunzip:v0.1.0' fi # print dockerfile diff --git a/target/executable/kallisto/kallisto_index/.config.vsh.yaml b/target/executable/kallisto/kallisto_index/.config.vsh.yaml index fb73872..3dfe0b9 100644 --- a/target/executable/kallisto/kallisto_index/.config.vsh.yaml +++ b/target/executable/kallisto/kallisto_index/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "kallisto_index" namespace: "kallisto" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -135,7 +135,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -155,10 +155,10 @@ build_info: output: "target/executable/kallisto/kallisto_index" executable: "target/executable/kallisto/kallisto_index/kallisto_index" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -180,5 +180,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/kallisto/kallisto_index/kallisto_index b/target/executable/kallisto/kallisto_index/kallisto_index index c3a9a19..b6bd819 100755 --- a/target/executable/kallisto/kallisto_index/kallisto_index +++ b/target/executable/kallisto/kallisto_index/kallisto_index @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# kallisto_index v0.1 +# kallisto_index v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "kallisto_index v0.1" + echo "kallisto_index v0.1.0" echo "" echo "Create Kallisto index." echo "" @@ -471,10 +471,10 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \ mv kallisto/kallisto /usr/local/bin/ LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index" -LABEL org.opencontainers.image.created="2024-10-04T10:28:30Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:55Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -610,7 +610,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "kallisto_index v0.1" + echo "kallisto_index v0.1.0" exit ;; --transcriptome_fasta) @@ -734,7 +734,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/kallisto/kallisto_index:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/kallisto/kallisto_index:v0.1.0' fi # print dockerfile diff --git a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml index ebb75bb..2ad005e 100644 --- a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml +++ b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "kallisto_quant" namespace: "kallisto" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -233,7 +233,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -253,10 +253,10 @@ build_info: output: "target/executable/kallisto/kallisto_quant" executable: "target/executable/kallisto/kallisto_quant/kallisto_quant" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -278,5 +278,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/kallisto/kallisto_quant/kallisto_quant b/target/executable/kallisto/kallisto_quant/kallisto_quant index 9b2da36..0ad601e 100755 --- a/target/executable/kallisto/kallisto_quant/kallisto_quant +++ b/target/executable/kallisto/kallisto_quant/kallisto_quant @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# kallisto_quant v0.1 +# kallisto_quant v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "kallisto_quant v0.1" + echo "kallisto_quant v0.1.0" echo "" echo "Computes equivalence classes for reads and quantifies abundances." echo "" @@ -515,10 +515,10 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \ mv kallisto/kallisto /usr/local/bin/ LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant" -LABEL org.opencontainers.image.created="2024-10-04T10:28:30Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:55Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -654,7 +654,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "kallisto_quant v0.1" + echo "kallisto_quant v0.1.0" exit ;; --input) @@ -883,7 +883,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/kallisto/kallisto_quant:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/kallisto/kallisto_quant:v0.1.0' fi # print dockerfile diff --git a/target/executable/multiqc_custom_biotype/.config.vsh.yaml b/target/executable/multiqc_custom_biotype/.config.vsh.yaml index 67b1fc8..6cecf74 100644 --- a/target/executable/multiqc_custom_biotype/.config.vsh.yaml +++ b/target/executable/multiqc_custom_biotype/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "multiqc_custom_biotype" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -152,7 +152,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -173,10 +173,10 @@ build_info: output: "target/executable/multiqc_custom_biotype" executable: "target/executable/multiqc_custom_biotype/multiqc_custom_biotype" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -198,5 +198,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/multiqc_custom_biotype/multiqc_custom_biotype b/target/executable/multiqc_custom_biotype/multiqc_custom_biotype index dd33b95..7557ea5 100755 --- a/target/executable/multiqc_custom_biotype/multiqc_custom_biotype +++ b/target/executable/multiqc_custom_biotype/multiqc_custom_biotype @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# multiqc_custom_biotype v0.1 +# multiqc_custom_biotype v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "multiqc_custom_biotype v0.1" + echo "multiqc_custom_biotype v0.1.0" echo "" echo "Calculate features percentage for biotype counts" echo "" @@ -481,10 +481,10 @@ RUN apt-get update && \ RUN pip install --upgrade pip LABEL org.opencontainers.image.description="Companion container for running component multiqc_custom_biotype" -LABEL org.opencontainers.image.created="2024-10-04T10:28:25Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:50Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -620,7 +620,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "multiqc_custom_biotype v0.1" + echo "multiqc_custom_biotype v0.1.0" exit ;; --biocounts) @@ -766,7 +766,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/multiqc_custom_biotype:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/multiqc_custom_biotype:v0.1.0' fi # print dockerfile diff --git a/target/executable/picard_markduplicates/.config.vsh.yaml b/target/executable/picard_markduplicates/.config.vsh.yaml index a4f29a2..692f42e 100644 --- a/target/executable/picard_markduplicates/.config.vsh.yaml +++ b/target/executable/picard_markduplicates/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "picard_markduplicates" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -186,7 +186,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -207,10 +207,10 @@ build_info: output: "target/executable/picard_markduplicates" executable: "target/executable/picard_markduplicates/picard_markduplicates" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -232,5 +232,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/picard_markduplicates/picard_markduplicates b/target/executable/picard_markduplicates/picard_markduplicates index c01969f..dceadb0 100755 --- a/target/executable/picard_markduplicates/picard_markduplicates +++ b/target/executable/picard_markduplicates/picard_markduplicates @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# picard_markduplicates v0.1 +# picard_markduplicates v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "picard_markduplicates v0.1" + echo "picard_markduplicates v0.1.0" echo "" echo "Locate and tag duplicate reads in a BAM file" echo "" @@ -494,10 +494,10 @@ wget --no-check-certificate https://github.com/broadinstitute/picard/releases/do mv picard.jar /usr/local/bin LABEL org.opencontainers.image.description="Companion container for running component picard_markduplicates" -LABEL org.opencontainers.image.created="2024-10-04T10:28:32Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:57Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -633,7 +633,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "picard_markduplicates v0.1" + echo "picard_markduplicates v0.1.0" exit ;; --bam) @@ -801,7 +801,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/picard_markduplicates:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/picard_markduplicates:v0.1.0' fi # print dockerfile diff --git a/target/executable/prepare_multiqc_input/.config.vsh.yaml b/target/executable/prepare_multiqc_input/.config.vsh.yaml index a7996d2..b373b47 100644 --- a/target/executable/prepare_multiqc_input/.config.vsh.yaml +++ b/target/executable/prepare_multiqc_input/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "prepare_multiqc_input" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -396,7 +396,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" entrypoint: [] cmd: null @@ -409,10 +409,10 @@ build_info: output: "target/executable/prepare_multiqc_input" executable: "target/executable/prepare_multiqc_input/prepare_multiqc_input" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -434,5 +434,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/prepare_multiqc_input/prepare_multiqc_input b/target/executable/prepare_multiqc_input/prepare_multiqc_input index 6b4ee97..2d50ef5 100755 --- a/target/executable/prepare_multiqc_input/prepare_multiqc_input +++ b/target/executable/prepare_multiqc_input/prepare_multiqc_input @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# prepare_multiqc_input v0.1 +# prepare_multiqc_input v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "prepare_multiqc_input v0.1" + echo "prepare_multiqc_input v0.1.0" echo "" echo "Prepare directory with all the input files for MultiQC." echo "" @@ -557,10 +557,10 @@ function ViashDockerfile { FROM ubuntu:22.04 ENTRYPOINT [] LABEL org.opencontainers.image.description="Companion container for running component prepare_multiqc_input" -LABEL org.opencontainers.image.created="2024-10-04T10:28:28Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:53Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -696,7 +696,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "prepare_multiqc_input v0.1" + echo "prepare_multiqc_input v0.1.0" exit ;; --fail_trimming_multiqc) @@ -1311,7 +1311,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/prepare_multiqc_input:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/prepare_multiqc_input:v0.1.0' fi # print dockerfile diff --git a/target/executable/preprocess_transcripts_fasta/.config.vsh.yaml b/target/executable/preprocess_transcripts_fasta/.config.vsh.yaml index 82793a7..78194b4 100644 --- a/target/executable/preprocess_transcripts_fasta/.config.vsh.yaml +++ b/target/executable/preprocess_transcripts_fasta/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "preprocess_transcripts_fasta" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -125,7 +125,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" entrypoint: [] cmd: null @@ -138,10 +138,10 @@ build_info: output: "target/executable/preprocess_transcripts_fasta" executable: "target/executable/preprocess_transcripts_fasta/preprocess_transcripts_fasta" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -163,5 +163,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/preprocess_transcripts_fasta/preprocess_transcripts_fasta b/target/executable/preprocess_transcripts_fasta/preprocess_transcripts_fasta index c2604cd..7667657 100755 --- a/target/executable/preprocess_transcripts_fasta/preprocess_transcripts_fasta +++ b/target/executable/preprocess_transcripts_fasta/preprocess_transcripts_fasta @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# preprocess_transcripts_fasta v0.1 +# preprocess_transcripts_fasta v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "preprocess_transcripts_fasta v0.1" + echo "preprocess_transcripts_fasta v0.1.0" echo "" echo "Process transcripts FASTA if GTF file is GENOCODE format" echo "" @@ -462,10 +462,10 @@ function ViashDockerfile { FROM ubuntu:22.04 ENTRYPOINT [] LABEL org.opencontainers.image.description="Companion container for running component preprocess_transcripts_fasta" -LABEL org.opencontainers.image.created="2024-10-04T10:28:28Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:52Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -601,7 +601,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "preprocess_transcripts_fasta v0.1" + echo "preprocess_transcripts_fasta v0.1.0" exit ;; --transcript_fasta) @@ -714,7 +714,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/preprocess_transcripts_fasta:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/preprocess_transcripts_fasta:v0.1.0' fi # print dockerfile diff --git a/target/executable/preseq_lcextrap/.config.vsh.yaml b/target/executable/preseq_lcextrap/.config.vsh.yaml index e1f383a..8db2daf 100644 --- a/target/executable/preseq_lcextrap/.config.vsh.yaml +++ b/target/executable/preseq_lcextrap/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "preseq_lcextrap" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -146,7 +146,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -191,10 +191,10 @@ build_info: output: "target/executable/preseq_lcextrap" executable: "target/executable/preseq_lcextrap/preseq_lcextrap" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -216,5 +216,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/preseq_lcextrap/preseq_lcextrap b/target/executable/preseq_lcextrap/preseq_lcextrap index 5e8e540..cc002ac 100755 --- a/target/executable/preseq_lcextrap/preseq_lcextrap +++ b/target/executable/preseq_lcextrap/preseq_lcextrap @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# preseq_lcextrap v0.1 +# preseq_lcextrap v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "preseq_lcextrap v0.1" + echo "preseq_lcextrap v0.1.0" echo "" echo "Computing the expected future yield of distinct reads and bounds on the number" echo "of total distinct reads in the library and the associated confidence intervals." @@ -495,10 +495,10 @@ mkdir build && cd build && \ make && make install && make HAVE_HTSLIB=1 all LABEL org.opencontainers.image.description="Companion container for running component preseq_lcextrap" -LABEL org.opencontainers.image.created="2024-10-04T10:28:17Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:42Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -634,7 +634,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "preseq_lcextrap v0.1" + echo "preseq_lcextrap v0.1.0" exit ;; --input) @@ -769,7 +769,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/preseq_lcextrap:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/preseq_lcextrap:v0.1.0' fi # print dockerfile diff --git a/target/executable/qualimap/.config.vsh.yaml b/target/executable/qualimap/.config.vsh.yaml index 7ce58aa..aa517e0 100644 --- a/target/executable/qualimap/.config.vsh.yaml +++ b/target/executable/qualimap/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "qualimap" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -237,7 +237,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -271,10 +271,10 @@ build_info: output: "target/executable/qualimap" executable: "target/executable/qualimap/qualimap" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -296,5 +296,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/qualimap/qualimap b/target/executable/qualimap/qualimap index 603b205..aa9b76b 100755 --- a/target/executable/qualimap/qualimap +++ b/target/executable/qualimap/qualimap @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# qualimap v0.1 +# qualimap v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "qualimap v0.1" + echo "qualimap v0.1.0" echo "" echo "RNA-seq QC analysis using the qualimap" echo "" @@ -537,10 +537,10 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag Rscript -e 'remotes::install_cran(c("optparse"), repos = "https://cran.rstudio.com")' LABEL org.opencontainers.image.description="Companion container for running component qualimap" -LABEL org.opencontainers.image.created="2024-10-04T10:28:16Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:40Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -676,7 +676,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "qualimap v0.1" + echo "qualimap v0.1.0" exit ;; --input) @@ -887,7 +887,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/qualimap:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/qualimap:v0.1.0' fi # print dockerfile diff --git a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml index 849df32..b68472e 100644 --- a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml +++ b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rsem_calculate_expression" namespace: "rsem" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -251,7 +251,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -299,10 +299,10 @@ build_info: output: "target/executable/rsem/rsem_calculate_expression" executable: "target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -324,5 +324,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression index b86d720..0379149 100755 --- a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression +++ b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# rsem_calculate_expression v0.1 +# rsem_calculate_expression v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "rsem_calculate_expression v0.1" + echo "rsem_calculate_expression v0.1.0" echo "" echo "Calculate expression with RSEM." echo "" @@ -542,10 +542,10 @@ echo 'export PATH=$PATH:/usr/local/bin' >> ~/.bashrc && \ /bin/bash -c "source /etc/profile && source ~/.bashrc && echo $PATH && which STAR" LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_calculate_expression" -LABEL org.opencontainers.image.created="2024-10-04T10:28:30Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:55Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -681,7 +681,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "rsem_calculate_expression v0.1" + echo "rsem_calculate_expression v0.1.0" exit ;; --id) @@ -921,7 +921,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rsem/rsem_calculate_expression:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rsem/rsem_calculate_expression:v0.1.0' fi # print dockerfile diff --git a/target/executable/rsem/rsem_merge_counts/.config.vsh.yaml b/target/executable/rsem/rsem_merge_counts/.config.vsh.yaml index 5332cd0..b09832a 100644 --- a/target/executable/rsem/rsem_merge_counts/.config.vsh.yaml +++ b/target/executable/rsem/rsem_merge_counts/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rsem_merge_counts" namespace: "rsem" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -169,7 +169,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" entrypoint: [] cmd: null @@ -182,10 +182,10 @@ build_info: output: "target/executable/rsem/rsem_merge_counts" executable: "target/executable/rsem/rsem_merge_counts/rsem_merge_counts" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -207,5 +207,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/rsem/rsem_merge_counts/rsem_merge_counts b/target/executable/rsem/rsem_merge_counts/rsem_merge_counts index 62fa632..a1a6b5a 100755 --- a/target/executable/rsem/rsem_merge_counts/rsem_merge_counts +++ b/target/executable/rsem/rsem_merge_counts/rsem_merge_counts @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# rsem_merge_counts v0.1 +# rsem_merge_counts v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "rsem_merge_counts v0.1" + echo "rsem_merge_counts v0.1.0" echo "" echo "Merge the transcript quantification results obtained from rsem" echo "calculate-expression across all samples." @@ -483,10 +483,10 @@ function ViashDockerfile { FROM ubuntu:22.04 ENTRYPOINT [] LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_merge_counts" -LABEL org.opencontainers.image.created="2024-10-04T10:28:29Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:54Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -622,7 +622,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "rsem_merge_counts v0.1" + echo "rsem_merge_counts v0.1.0" exit ;; --counts_gene) @@ -779,7 +779,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rsem/rsem_merge_counts:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rsem/rsem_merge_counts:v0.1.0' fi # print dockerfile diff --git a/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml b/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml index 8429211..c09b25e 100644 --- a/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_bamstat" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -140,7 +140,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -163,10 +163,10 @@ build_info: output: "target/executable/rseqc/rseqc_bamstat" executable: "target/executable/rseqc/rseqc_bamstat/rseqc_bamstat" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -188,5 +188,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat b/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat index 53115df..67bb26a 100755 --- a/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat +++ b/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# rseqc_bamstat v0.1 +# rseqc_bamstat v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "rseqc_bamstat v0.1" + echo "rseqc_bamstat v0.1.0" echo "" echo "Generate statistics from a bam file." echo "" @@ -477,10 +477,10 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "RSeQC" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_bamstat" -LABEL org.opencontainers.image.created="2024-10-04T10:28:27Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:52Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -616,7 +616,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "rseqc_bamstat v0.1" + echo "rseqc_bamstat v0.1.0" exit ;; --input) @@ -740,7 +740,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_bamstat:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_bamstat:v0.1.0' fi # print dockerfile diff --git a/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml b/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml index ea13c84..8a88899 100644 --- a/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_inferexperiment" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -163,7 +163,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -186,10 +186,10 @@ build_info: output: "target/executable/rseqc/rseqc_inferexperiment" executable: "target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -211,5 +211,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment b/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment index 1ee4486..c2c7cb0 100755 --- a/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment +++ b/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# rseqc_inferexperiment v0.1 +# rseqc_inferexperiment v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "rseqc_inferexperiment v0.1" + echo "rseqc_inferexperiment v0.1.0" echo "" echo "Infer strandedness from sequencing reads" echo "" @@ -487,10 +487,10 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "RSeQC" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inferexperiment" -LABEL org.opencontainers.image.created="2024-10-04T10:28:25Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:50Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -626,7 +626,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "rseqc_inferexperiment v0.1" + echo "rseqc_inferexperiment v0.1.0" exit ;; --input) @@ -772,7 +772,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_inferexperiment:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_inferexperiment:v0.1.0' fi # print dockerfile diff --git a/target/executable/rseqc/rseqc_innerdistance/.config.vsh.yaml b/target/executable/rseqc/rseqc_innerdistance/.config.vsh.yaml index 69178af..106fd6f 100644 --- a/target/executable/rseqc/rseqc_innerdistance/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_innerdistance/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_innerdistance" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -248,7 +248,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -272,10 +272,10 @@ build_info: output: "target/executable/rseqc/rseqc_innerdistance" executable: "target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -297,5 +297,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance b/target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance index c3a3835..43f421f 100755 --- a/target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance +++ b/target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# rseqc_innerdistance v0.1 +# rseqc_innerdistance v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "rseqc_innerdistance v0.1" + echo "rseqc_innerdistance v0.1.0" echo "" echo "Calculate inner distance between read pairs." echo "" @@ -529,10 +529,10 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "RSeQC" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_innerdistance" -LABEL org.opencontainers.image.created="2024-10-04T10:28:27Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:52Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -668,7 +668,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "rseqc_innerdistance v0.1" + echo "rseqc_innerdistance v0.1.0" exit ;; --input) @@ -891,7 +891,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_innerdistance:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_innerdistance:v0.1.0' fi # print dockerfile diff --git a/target/executable/rseqc/rseqc_junctionannotation/.config.vsh.yaml b/target/executable/rseqc/rseqc_junctionannotation/.config.vsh.yaml index 0354f73..fb743ed 100644 --- a/target/executable/rseqc/rseqc_junctionannotation/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_junctionannotation/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_junctionannotation" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -236,7 +236,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -260,10 +260,10 @@ build_info: output: "target/executable/rseqc/rseqc_junctionannotation" executable: "target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -285,5 +285,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation b/target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation index afb0a24..8602fb7 100755 --- a/target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation +++ b/target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# rseqc_junctionannotation v0.1 +# rseqc_junctionannotation v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "rseqc_junctionannotation v0.1" + echo "rseqc_junctionannotation v0.1.0" echo "" echo "Compare detected splice junctions to reference gene model." echo "" @@ -519,10 +519,10 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "RSeQC" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_junctionannotation" -LABEL org.opencontainers.image.created="2024-10-04T10:28:26Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:51Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -658,7 +658,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "rseqc_junctionannotation v0.1" + echo "rseqc_junctionannotation v0.1.0" exit ;; --input) @@ -870,7 +870,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_junctionannotation:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_junctionannotation:v0.1.0' fi # print dockerfile diff --git a/target/executable/rseqc/rseqc_junctionsaturation/.config.vsh.yaml b/target/executable/rseqc/rseqc_junctionsaturation/.config.vsh.yaml index 718cb9a..c177ff4 100644 --- a/target/executable/rseqc/rseqc_junctionsaturation/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_junctionsaturation/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_junctionsaturation" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -225,7 +225,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -249,10 +249,10 @@ build_info: output: "target/executable/rseqc/rseqc_junctionsaturation" executable: "target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -274,5 +274,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation b/target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation index 47819c2..ec0cd42 100755 --- a/target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation +++ b/target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# rseqc_junctionsaturation v0.1 +# rseqc_junctionsaturation v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "rseqc_junctionsaturation v0.1" + echo "rseqc_junctionsaturation v0.1.0" echo "" echo "Compare detected splice junctions to reference gene model." echo "" @@ -522,10 +522,10 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "RSeQC" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_junctionsaturation" -LABEL org.opencontainers.image.created="2024-10-04T10:28:26Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:51Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -661,7 +661,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "rseqc_junctionsaturation v0.1" + echo "rseqc_junctionsaturation v0.1.0" exit ;; --input) @@ -862,7 +862,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_junctionsaturation:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_junctionsaturation:v0.1.0' fi # print dockerfile diff --git a/target/executable/rseqc/rseqc_readdistribution/.config.vsh.yaml b/target/executable/rseqc/rseqc_readdistribution/.config.vsh.yaml index b4cd271..68ee8bf 100644 --- a/target/executable/rseqc/rseqc_readdistribution/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_readdistribution/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_readdistribution" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -139,7 +139,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -162,10 +162,10 @@ build_info: output: "target/executable/rseqc/rseqc_readdistribution" executable: "target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -187,5 +187,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution b/target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution index 021e7ad..f72e0d3 100755 --- a/target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution +++ b/target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# rseqc_readdistribution v0.1 +# rseqc_readdistribution v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "rseqc_readdistribution v0.1" + echo "rseqc_readdistribution v0.1.0" echo "" echo "Calculate how mapped reads are distributed over genomic features." echo "" @@ -474,10 +474,10 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "RSeQC" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_readdistribution" -LABEL org.opencontainers.image.created="2024-10-04T10:28:27Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:52Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -613,7 +613,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "rseqc_readdistribution v0.1" + echo "rseqc_readdistribution v0.1.0" exit ;; --input) @@ -737,7 +737,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_readdistribution:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_readdistribution:v0.1.0' fi # print dockerfile diff --git a/target/executable/rseqc/rseqc_readduplication/.config.vsh.yaml b/target/executable/rseqc/rseqc_readduplication/.config.vsh.yaml index 652bf38..e424662 100644 --- a/target/executable/rseqc/rseqc_readduplication/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_readduplication/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_readduplication" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -187,7 +187,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -211,10 +211,10 @@ build_info: output: "target/executable/rseqc/rseqc_readduplication" executable: "target/executable/rseqc/rseqc_readduplication/rseqc_readduplication" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -236,5 +236,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/rseqc/rseqc_readduplication/rseqc_readduplication b/target/executable/rseqc/rseqc_readduplication/rseqc_readduplication index 581a202..524fb58 100755 --- a/target/executable/rseqc/rseqc_readduplication/rseqc_readduplication +++ b/target/executable/rseqc/rseqc_readduplication/rseqc_readduplication @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# rseqc_readduplication v0.1 +# rseqc_readduplication v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "rseqc_readduplication v0.1" + echo "rseqc_readduplication v0.1.0" echo "" echo "Calculate read duplication rate." echo "" @@ -499,10 +499,10 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "RSeQC" LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_readduplication" -LABEL org.opencontainers.image.created="2024-10-04T10:28:25Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:50Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -638,7 +638,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "rseqc_readduplication v0.1" + echo "rseqc_readduplication v0.1.0" exit ;; --input) @@ -806,7 +806,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_readduplication:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_readduplication:v0.1.0' fi # print dockerfile diff --git a/target/executable/rseqc/rseqc_tin/.config.vsh.yaml b/target/executable/rseqc/rseqc_tin/.config.vsh.yaml index 8012124..acf9174 100644 --- a/target/executable/rseqc/rseqc_tin/.config.vsh.yaml +++ b/target/executable/rseqc/rseqc_tin/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_tin" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -193,7 +193,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -214,10 +214,10 @@ build_info: output: "target/executable/rseqc/rseqc_tin" executable: "target/executable/rseqc/rseqc_tin/rseqc_tin" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -239,5 +239,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/rseqc/rseqc_tin/rseqc_tin b/target/executable/rseqc/rseqc_tin/rseqc_tin index de2fd79..61ef225 100755 --- a/target/executable/rseqc/rseqc_tin/rseqc_tin +++ b/target/executable/rseqc/rseqc_tin/rseqc_tin @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# rseqc_tin v0.1 +# rseqc_tin v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "rseqc_tin v0.1" + echo "rseqc_tin v0.1.0" echo "" echo "Calculte TIN (transcript integrity number) from RNA-seq reads" echo "" @@ -501,10 +501,10 @@ RUN apt-get update && \ RUN pip3 install RSeQC LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_tin" -LABEL org.opencontainers.image.created="2024-10-04T10:28:26Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:50Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -640,7 +640,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "rseqc_tin v0.1" + echo "rseqc_tin v0.1.0" exit ;; --bam_input) @@ -813,7 +813,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_tin:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_tin:v0.1.0' fi # print dockerfile diff --git a/target/executable/sortmerna/.config.vsh.yaml b/target/executable/sortmerna/.config.vsh.yaml index c8e1dff..aad80d2 100644 --- a/target/executable/sortmerna/.config.vsh.yaml +++ b/target/executable/sortmerna/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "sortmerna" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -179,7 +179,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -198,10 +198,10 @@ build_info: output: "target/executable/sortmerna" executable: "target/executable/sortmerna/sortmerna" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -223,5 +223,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/sortmerna/sortmerna b/target/executable/sortmerna/sortmerna index 593ccf4..c9a6ef7 100755 --- a/target/executable/sortmerna/sortmerna +++ b/target/executable/sortmerna/sortmerna @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# sortmerna v0.1 +# sortmerna v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "sortmerna v0.1" + echo "sortmerna v0.1.0" echo "" echo "Local sequence alignment tool for filtering, mapping and clustering. The main" echo "application of SortMeRNA is filtering rRNA from metatranscriptomic data." @@ -492,10 +492,10 @@ wget --no-check-certificate https://github.com/sortmerna/sortmerna/releases/down bash sortmerna-4.3.6-Linux.sh --skip-license LABEL org.opencontainers.image.description="Companion container for running component sortmerna" -LABEL org.opencontainers.image.created="2024-10-04T10:28:32Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:57Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -631,7 +631,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "sortmerna v0.1" + echo "sortmerna v0.1.0" exit ;; --paired) @@ -794,7 +794,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/sortmerna:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/sortmerna:v0.1.0' fi # print dockerfile diff --git a/target/executable/stringtie/.config.vsh.yaml b/target/executable/stringtie/.config.vsh.yaml index 8baf9b1..7a58393 100644 --- a/target/executable/stringtie/.config.vsh.yaml +++ b/target/executable/stringtie/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "stringtie" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -196,7 +196,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -216,10 +216,10 @@ build_info: output: "target/executable/stringtie" executable: "target/executable/stringtie/stringtie" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -241,5 +241,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/stringtie/stringtie b/target/executable/stringtie/stringtie index 1625957..dee6930 100755 --- a/target/executable/stringtie/stringtie +++ b/target/executable/stringtie/stringtie @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# stringtie v0.1 +# stringtie v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "stringtie v0.1" + echo "stringtie v0.1.0" echo "" echo "Transcript assembly and quantification for RNA-Seq" echo "" @@ -496,10 +496,10 @@ tar -xzf stringtie-2.2.1.Linux_x86_64.tar.gz && \ cp stringtie-2.2.1.Linux_x86_64/stringtie /usr/local/bin/ LABEL org.opencontainers.image.description="Companion container for running component stringtie" -LABEL org.opencontainers.image.created="2024-10-04T10:28:29Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:54Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -635,7 +635,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "stringtie v0.1" + echo "stringtie v0.1.0" exit ;; --strandedness) @@ -825,7 +825,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/stringtie:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/stringtie:v0.1.0' fi # print dockerfile diff --git a/target/executable/summarizedexperiment/.config.vsh.yaml b/target/executable/summarizedexperiment/.config.vsh.yaml index b633ece..9187b55 100644 --- a/target/executable/summarizedexperiment/.config.vsh.yaml +++ b/target/executable/summarizedexperiment/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "summarizedexperiment" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -175,7 +175,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -199,10 +199,10 @@ build_info: output: "target/executable/summarizedexperiment" executable: "target/executable/summarizedexperiment/summarizedexperiment" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -224,5 +224,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/summarizedexperiment/summarizedexperiment b/target/executable/summarizedexperiment/summarizedexperiment index 6604e91..0be8cc8 100755 --- a/target/executable/summarizedexperiment/summarizedexperiment +++ b/target/executable/summarizedexperiment/summarizedexperiment @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# summarizedexperiment v0.1 +# summarizedexperiment v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "summarizedexperiment v0.1" + echo "summarizedexperiment v0.1.0" echo "" echo "Create SummarizedExperiment object from Salmon counts" echo "" @@ -487,10 +487,10 @@ RUN Rscript -e 'if (!requireNamespace("BiocManager", quietly = TRUE)) install.pa Rscript -e 'if (!requireNamespace("tximeta", quietly = TRUE)) BiocManager::install("tximeta")' LABEL org.opencontainers.image.description="Companion container for running component summarizedexperiment" -LABEL org.opencontainers.image.created="2024-10-04T10:28:33Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:58Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -626,7 +626,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "summarizedexperiment v0.1" + echo "summarizedexperiment v0.1.0" exit ;; --tpm_gene) @@ -805,7 +805,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/summarizedexperiment:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/summarizedexperiment:v0.1.0' fi # print dockerfile diff --git a/target/executable/trimgalore/.config.vsh.yaml b/target/executable/trimgalore/.config.vsh.yaml index 1f85958..f18c6ab 100644 --- a/target/executable/trimgalore/.config.vsh.yaml +++ b/target/executable/trimgalore/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "trimgalore" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -770,7 +770,7 @@ engines: id: "docker" image: "quay.io/biocontainers/trim-galore:0.6.9--hdfd78af_0" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -788,10 +788,10 @@ build_info: output: "target/executable/trimgalore" executable: "target/executable/trimgalore/trimgalore" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -813,5 +813,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/trimgalore/trimgalore b/target/executable/trimgalore/trimgalore index a564d1d..55a9c9b 100755 --- a/target/executable/trimgalore/trimgalore +++ b/target/executable/trimgalore/trimgalore @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# trimgalore v0.1 +# trimgalore v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "trimgalore v0.1" + echo "trimgalore v0.1.0" echo "" echo "A wrapper tool around Cutadapt and FastQC to consistently apply quality and" echo "adapter trimming to FastQ files." @@ -858,10 +858,10 @@ ENTRYPOINT [] RUN echo "TrimGalore: `trim_galore --version | sed -n 's/.*version\s\+\([0-9]\+\.[0-9]\+\.[0-9]\+\).*/\1/p'`" > /var/software_versions.txt LABEL org.opencontainers.image.description="Companion container for running component trimgalore" -LABEL org.opencontainers.image.created="2024-10-04T10:28:31Z" +LABEL org.opencontainers.image.created="2024-10-04T11:21:56Z" LABEL org.opencontainers.image.source="https://github.com/FelixKrueger/TrimGalore" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -997,7 +997,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "trimgalore v0.1" + echo "trimgalore v0.1.0" exit ;; --input) @@ -1725,7 +1725,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/trimgalore:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/trimgalore:v0.1.0' fi # print dockerfile diff --git a/target/executable/tx2gene/.config.vsh.yaml b/target/executable/tx2gene/.config.vsh.yaml index 3c6ebd2..bbcf4e9 100644 --- a/target/executable/tx2gene/.config.vsh.yaml +++ b/target/executable/tx2gene/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "tx2gene" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -170,7 +170,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -192,10 +192,10 @@ build_info: output: "target/executable/tx2gene" executable: "target/executable/tx2gene/tx2gene" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -217,5 +217,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/tx2gene/tx2gene b/target/executable/tx2gene/tx2gene index 4f3ff6a..9f65bf4 100755 --- a/target/executable/tx2gene/tx2gene +++ b/target/executable/tx2gene/tx2gene @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# tx2gene v0.1 +# tx2gene v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "tx2gene v0.1" + echo "tx2gene v0.1.0" echo "" echo "Get transcript id (tx) to gene names for tximport" echo "" @@ -487,10 +487,10 @@ RUN apt-get update && \ RUN pip install --upgrade pip LABEL org.opencontainers.image.description="Companion container for running component tx2gene" -LABEL org.opencontainers.image.created="2024-10-04T10:28:28Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:53Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -626,7 +626,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "tx2gene v0.1" + echo "tx2gene v0.1.0" exit ;; --quant_results) @@ -800,7 +800,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/tx2gene:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/tx2gene:v0.1.0' fi # print dockerfile diff --git a/target/executable/tximport/.config.vsh.yaml b/target/executable/tximport/.config.vsh.yaml index e9ef243..4768b40 100644 --- a/target/executable/tximport/.config.vsh.yaml +++ b/target/executable/tximport/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "tximport" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -218,7 +218,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -247,10 +247,10 @@ build_info: output: "target/executable/tximport" executable: "target/executable/tximport/tximport" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -272,5 +272,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/tximport/tximport b/target/executable/tximport/tximport index 6aa3521..2c70ae7 100755 --- a/target/executable/tximport/tximport +++ b/target/executable/tximport/tximport @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# tximport v0.1 +# tximport v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "tximport v0.1" + echo "tximport v0.1.0" echo "" echo "Get dataframe linking transcript ID, gene ID, and gene name" echo "" @@ -508,10 +508,10 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag Rscript -e 'remotes::install_cran(c("jsonlite"), repos = "https://cran.rstudio.com")' LABEL org.opencontainers.image.description="Companion container for running component tximport" -LABEL org.opencontainers.image.created="2024-10-04T10:28:23Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:48Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -647,7 +647,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "tximport v0.1" + echo "tximport v0.1.0" exit ;; --quant_results) @@ -865,7 +865,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/tximport:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/tximport:v0.1.0' fi # print dockerfile diff --git a/target/executable/ucsc/bedclip/.config.vsh.yaml b/target/executable/ucsc/bedclip/.config.vsh.yaml index 63316f1..beea8cc 100644 --- a/target/executable/ucsc/bedclip/.config.vsh.yaml +++ b/target/executable/ucsc/bedclip/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "bedclip" namespace: "ucsc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -141,7 +141,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -164,10 +164,10 @@ build_info: output: "target/executable/ucsc/bedclip" executable: "target/executable/ucsc/bedclip/bedclip" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -189,5 +189,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/ucsc/bedclip/bedclip b/target/executable/ucsc/bedclip/bedclip index c76123e..a2a15ef 100755 --- a/target/executable/ucsc/bedclip/bedclip +++ b/target/executable/ucsc/bedclip/bedclip @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# bedclip v0.1 +# bedclip v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "bedclip v0.1" + echo "bedclip v0.1.0" echo "" echo "Remove lines from bed file that refer to off-chromosome locations" echo "" @@ -473,10 +473,10 @@ RUN apt-get update && \ RUN rsync -aP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/linux.x86_64/bedClip /usr/local/bin/ LABEL org.opencontainers.image.description="Companion container for running component ucsc bedclip" -LABEL org.opencontainers.image.created="2024-10-04T10:28:24Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:49Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -612,7 +612,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "bedclip v0.1" + echo "bedclip v0.1.0" exit ;; --input_bedgraph) @@ -736,7 +736,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/ucsc/bedclip:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/ucsc/bedclip:v0.1.0' fi # print dockerfile diff --git a/target/executable/ucsc/bedgraphtobigwig/.config.vsh.yaml b/target/executable/ucsc/bedgraphtobigwig/.config.vsh.yaml index a51345a..6dfcdd4 100644 --- a/target/executable/ucsc/bedgraphtobigwig/.config.vsh.yaml +++ b/target/executable/ucsc/bedgraphtobigwig/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "bedgraphtobigwig" namespace: "ucsc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -141,7 +141,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -164,10 +164,10 @@ build_info: output: "target/executable/ucsc/bedgraphtobigwig" executable: "target/executable/ucsc/bedgraphtobigwig/bedgraphtobigwig" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -189,5 +189,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/ucsc/bedgraphtobigwig/bedgraphtobigwig b/target/executable/ucsc/bedgraphtobigwig/bedgraphtobigwig index 664e7ba..cbc88fa 100755 --- a/target/executable/ucsc/bedgraphtobigwig/bedgraphtobigwig +++ b/target/executable/ucsc/bedgraphtobigwig/bedgraphtobigwig @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# bedgraphtobigwig v0.1 +# bedgraphtobigwig v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "bedgraphtobigwig v0.1" + echo "bedgraphtobigwig v0.1.0" echo "" echo "Convert a bedGraph file to bigWig format" echo "" @@ -473,10 +473,10 @@ RUN apt-get update && \ RUN rsync -aP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/linux.x86_64/bedGraphToBigWig /usr/local/bin/ LABEL org.opencontainers.image.description="Companion container for running component ucsc bedgraphtobigwig" -LABEL org.opencontainers.image.created="2024-10-04T10:28:24Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:49Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -612,7 +612,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "bedgraphtobigwig v0.1" + echo "bedgraphtobigwig v0.1.0" exit ;; --bedgraph) @@ -736,7 +736,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/ucsc/bedgraphtobigwig:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/ucsc/bedgraphtobigwig:v0.1.0' fi # print dockerfile diff --git a/target/executable/umitools/umitools_dedup/.config.vsh.yaml b/target/executable/umitools/umitools_dedup/.config.vsh.yaml index f3f69a5..980dabb 100644 --- a/target/executable/umitools/umitools_dedup/.config.vsh.yaml +++ b/target/executable/umitools/umitools_dedup/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "umitools_dedup" namespace: "umitools" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -172,7 +172,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -195,10 +195,10 @@ build_info: output: "target/executable/umitools/umitools_dedup" executable: "target/executable/umitools/umitools_dedup/umitools_dedup" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -220,5 +220,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/umitools/umitools_dedup/umitools_dedup b/target/executable/umitools/umitools_dedup/umitools_dedup index f7b41ea..66abf8a 100755 --- a/target/executable/umitools/umitools_dedup/umitools_dedup +++ b/target/executable/umitools/umitools_dedup/umitools_dedup @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# umitools_dedup v0.1 +# umitools_dedup v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "umitools_dedup v0.1" + echo "umitools_dedup v0.1.0" echo "" echo "Deduplicate reads based on the mapping co-ordinate and the UMI attached to the" echo "read." @@ -489,10 +489,10 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "umi_tools" LABEL org.opencontainers.image.description="Companion container for running component umitools umitools_dedup" -LABEL org.opencontainers.image.created="2024-10-04T10:28:31Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:56Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -628,7 +628,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "umitools_dedup v0.1" + echo "umitools_dedup v0.1.0" exit ;; --paired) @@ -785,7 +785,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/umitools/umitools_dedup:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/umitools/umitools_dedup:v0.1.0' fi # print dockerfile diff --git a/target/executable/umitools/umitools_extract/.config.vsh.yaml b/target/executable/umitools/umitools_extract/.config.vsh.yaml index 935fbfb..0796b28 100644 --- a/target/executable/umitools/umitools_extract/.config.vsh.yaml +++ b/target/executable/umitools/umitools_extract/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "umitools_extract" namespace: "umitools" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -230,7 +230,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -253,10 +253,10 @@ build_info: output: "target/executable/umitools/umitools_extract" executable: "target/executable/umitools/umitools_extract/umitools_extract" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -278,5 +278,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/umitools/umitools_extract/umitools_extract b/target/executable/umitools/umitools_extract/umitools_extract index 8913442..7d8fbab 100755 --- a/target/executable/umitools/umitools_extract/umitools_extract +++ b/target/executable/umitools/umitools_extract/umitools_extract @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# umitools_extract v0.1 +# umitools_extract v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "umitools_extract v0.1" + echo "umitools_extract v0.1.0" echo "" echo "UMI-tools contains tools for dealing with Unique Molecular Identifiers" echo "(UMIs)/Random Molecular Tags (RMTs) and single cell RNA-Seq cell barcodes. See" @@ -521,10 +521,10 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "umi_tools" LABEL org.opencontainers.image.description="Companion container for running component umitools umitools_extract" -LABEL org.opencontainers.image.created="2024-10-04T10:28:31Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:56Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -660,7 +660,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "umitools_extract v0.1" + echo "umitools_extract v0.1.0" exit ;; --paired) @@ -862,7 +862,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/umitools/umitools_extract:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/umitools/umitools_extract:v0.1.0' fi # print dockerfile diff --git a/target/executable/umitools_prepareforquant/.config.vsh.yaml b/target/executable/umitools_prepareforquant/.config.vsh.yaml index ef62b15..028c4c4 100644 --- a/target/executable/umitools_prepareforquant/.config.vsh.yaml +++ b/target/executable/umitools_prepareforquant/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "umitools_prepareforquant" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -132,7 +132,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -156,10 +156,10 @@ build_info: output: "target/executable/umitools_prepareforquant" executable: "target/executable/umitools_prepareforquant/umitools_prepareforquant" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -181,5 +181,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/umitools_prepareforquant/umitools_prepareforquant b/target/executable/umitools_prepareforquant/umitools_prepareforquant index e1da9fc..5e6ba9b 100755 --- a/target/executable/umitools_prepareforquant/umitools_prepareforquant +++ b/target/executable/umitools_prepareforquant/umitools_prepareforquant @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# umitools_prepareforquant v0.1 +# umitools_prepareforquant v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "umitools_prepareforquant v0.1" + echo "umitools_prepareforquant v0.1.0" echo "" echo "Fix paired-end reads in name sorted BAM file to prepare for salmon" echo "quantification" @@ -473,10 +473,10 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "umi_tools" "pysam" LABEL org.opencontainers.image.description="Companion container for running component umitools_prepareforquant" -LABEL org.opencontainers.image.created="2024-10-04T10:28:33Z" -LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" -LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b" -LABEL org.opencontainers.image.version="v0.1" +LABEL org.opencontainers.image.created="2024-10-04T11:21:58Z" +LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" +LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" +LABEL org.opencontainers.image.version="v0.1.0" VIASHDOCKER fi @@ -612,7 +612,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "umitools_prepareforquant v0.1" + echo "umitools_prepareforquant v0.1.0" exit ;; --bam) @@ -736,7 +736,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then # determine docker image id if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then - VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/umitools_prepareforquant:v0.1' + VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/umitools_prepareforquant:v0.1.0' fi # print dockerfile diff --git a/target/executable/workflows/genome_alignment_and_quant/.config.vsh.yaml b/target/executable/workflows/genome_alignment_and_quant/.config.vsh.yaml index 9a28098..fb82133 100644 --- a/target/executable/workflows/genome_alignment_and_quant/.config.vsh.yaml +++ b/target/executable/workflows/genome_alignment_and_quant/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "genome_alignment_and_quant" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -603,8 +603,8 @@ build_info: output: "target/executable/workflows/genome_alignment_and_quant" executable: "target/executable/workflows/genome_alignment_and_quant/genome_alignment_and_quant" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/star/star_align_reads" - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/samtools/samtools_sort" @@ -617,7 +617,7 @@ build_info: - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/salmon/salmon_quant" - "target/nextflow/rsem/rsem_calculate_expression" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -639,5 +639,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/workflows/genome_alignment_and_quant/genome_alignment_and_quant b/target/executable/workflows/genome_alignment_and_quant/genome_alignment_and_quant index 9c0fdbf..b32dfec 100755 --- a/target/executable/workflows/genome_alignment_and_quant/genome_alignment_and_quant +++ b/target/executable/workflows/genome_alignment_and_quant/genome_alignment_and_quant @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# genome_alignment_and_quant v0.1 +# genome_alignment_and_quant v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "genome_alignment_and_quant v0.1" + echo "genome_alignment_and_quant v0.1.0" echo "" echo "A viash sub-workflow for genome alignment and quantification stage of" echo "nf-core/rnaseq pipeline." @@ -401,7 +401,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "genome_alignment_and_quant v0.1" + echo "genome_alignment_and_quant v0.1.0" exit ;; --id) diff --git a/target/executable/workflows/merge_quant_results/.config.vsh.yaml b/target/executable/workflows/merge_quant_results/.config.vsh.yaml index c648a07..0087009 100644 --- a/target/executable/workflows/merge_quant_results/.config.vsh.yaml +++ b/target/executable/workflows/merge_quant_results/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "merge_quant_results" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -278,14 +278,14 @@ build_info: output: "target/executable/workflows/merge_quant_results" executable: "target/executable/workflows/merge_quant_results/merge_quant_results" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/nextflow/tx2gene" - "target/nextflow/tximport" - "target/nextflow/summarizedexperiment" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -307,5 +307,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/workflows/merge_quant_results/merge_quant_results b/target/executable/workflows/merge_quant_results/merge_quant_results index 9eb6faa..9a61c8c 100755 --- a/target/executable/workflows/merge_quant_results/merge_quant_results +++ b/target/executable/workflows/merge_quant_results/merge_quant_results @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# merge_quant_results v0.1 +# merge_quant_results v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "merge_quant_results v0.1" + echo "merge_quant_results v0.1.0" echo "" echo "A sub-workflow to merge the counts obtained from salmon quant across all" echo "samples." @@ -267,7 +267,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "merge_quant_results v0.1" + echo "merge_quant_results v0.1.0" exit ;; --salmon_quant_results) diff --git a/target/executable/workflows/post_processing/.config.vsh.yaml b/target/executable/workflows/post_processing/.config.vsh.yaml index 5a54a76..2c7937a 100644 --- a/target/executable/workflows/post_processing/.config.vsh.yaml +++ b/target/executable/workflows/post_processing/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "post_processing" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -486,8 +486,8 @@ build_info: output: "target/executable/workflows/post_processing" executable: "target/executable/workflows/post_processing/post_processing" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/nextflow/picard_markduplicates" - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/samtools/samtools_sort" @@ -500,7 +500,7 @@ build_info: - "target/nextflow/ucsc/bedclip" - "target/nextflow/ucsc/bedgraphtobigwig" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -522,5 +522,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/workflows/post_processing/post_processing b/target/executable/workflows/post_processing/post_processing index 5a04d66..f564fc9 100755 --- a/target/executable/workflows/post_processing/post_processing +++ b/target/executable/workflows/post_processing/post_processing @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# post_processing v0.1 +# post_processing v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "post_processing v0.1" + echo "post_processing v0.1.0" echo "" echo "A viash sub-workflow for the post-processing stage of nf-core/rnaseq pipeline." echo "" @@ -350,7 +350,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "post_processing v0.1" + echo "post_processing v0.1.0" exit ;; --id) diff --git a/target/executable/workflows/pre_processing/.config.vsh.yaml b/target/executable/workflows/pre_processing/.config.vsh.yaml index fcfb32f..1dc571c 100644 --- a/target/executable/workflows/pre_processing/.config.vsh.yaml +++ b/target/executable/workflows/pre_processing/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "pre_processing" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Inputs" arguments: @@ -673,8 +673,8 @@ build_info: output: "target/executable/workflows/pre_processing" executable: "target/executable/workflows/pre_processing/pre_processing" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/nextflow/fastqc" - "target/nextflow/umitools/umitools_extract" @@ -686,7 +686,7 @@ build_info: - "target/nextflow/fq_subsample" - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/salmon/salmon_quant" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -708,5 +708,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/workflows/pre_processing/pre_processing b/target/executable/workflows/pre_processing/pre_processing index 16c3a63..716f5b6 100755 --- a/target/executable/workflows/pre_processing/pre_processing +++ b/target/executable/workflows/pre_processing/pre_processing @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# pre_processing v0.1 +# pre_processing v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "pre_processing v0.1" + echo "pre_processing v0.1.0" echo "" echo "A subworkflow for the pre-processing stage of the nf-core/rnaseq pipeline." echo "" @@ -453,7 +453,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "pre_processing v0.1" + echo "pre_processing v0.1.0" exit ;; --id) diff --git a/target/executable/workflows/prepare_genome/.config.vsh.yaml b/target/executable/workflows/prepare_genome/.config.vsh.yaml index bfc0ba2..6d91481 100644 --- a/target/executable/workflows/prepare_genome/.config.vsh.yaml +++ b/target/executable/workflows/prepare_genome/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "prepare_genome" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -496,8 +496,8 @@ build_info: output: "target/executable/workflows/prepare_genome" executable: "target/executable/workflows/prepare_genome/prepare_genome" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/nextflow/gunzip" - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/gffread" @@ -513,7 +513,7 @@ build_info: - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/salmon/salmon_index" - "target/nextflow/kallisto/kallisto_index" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -535,5 +535,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/workflows/prepare_genome/prepare_genome b/target/executable/workflows/prepare_genome/prepare_genome index 61540b8..0cfe7e8 100755 --- a/target/executable/workflows/prepare_genome/prepare_genome +++ b/target/executable/workflows/prepare_genome/prepare_genome @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# prepare_genome v0.1 +# prepare_genome v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "prepare_genome v0.1" + echo "prepare_genome v0.1.0" echo "" echo "A subworkflow for preparing all the required genome references" echo "" @@ -354,7 +354,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "prepare_genome v0.1" + echo "prepare_genome v0.1.0" exit ;; --fasta) diff --git a/target/executable/workflows/pseudo_alignment_and_quant/.config.vsh.yaml b/target/executable/workflows/pseudo_alignment_and_quant/.config.vsh.yaml index 409d531..9d3df69 100644 --- a/target/executable/workflows/pseudo_alignment_and_quant/.config.vsh.yaml +++ b/target/executable/workflows/pseudo_alignment_and_quant/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "pseudo_alignment_and_quant" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -283,13 +283,13 @@ build_info: output: "target/executable/workflows/pseudo_alignment_and_quant" executable: "target/executable/workflows/pseudo_alignment_and_quant/pseudo_alignment_and_quant" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/salmon/salmon_quant" - "target/nextflow/kallisto/kallisto_quant" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -311,5 +311,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/workflows/pseudo_alignment_and_quant/pseudo_alignment_and_quant b/target/executable/workflows/pseudo_alignment_and_quant/pseudo_alignment_and_quant index 6104a4d..039580f 100755 --- a/target/executable/workflows/pseudo_alignment_and_quant/pseudo_alignment_and_quant +++ b/target/executable/workflows/pseudo_alignment_and_quant/pseudo_alignment_and_quant @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# pseudo_alignment_and_quant v0.1 +# pseudo_alignment_and_quant v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "pseudo_alignment_and_quant v0.1" + echo "pseudo_alignment_and_quant v0.1.0" echo "" echo "A viash sub-workflow for pseudo alignment and quantification stage of" echo "nf-core/rnaseq pipeline." @@ -279,7 +279,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "pseudo_alignment_and_quant v0.1" + echo "pseudo_alignment_and_quant v0.1.0" exit ;; --id) diff --git a/target/executable/workflows/quality_control/.config.vsh.yaml b/target/executable/workflows/quality_control/.config.vsh.yaml index 89454fe..22a2110 100644 --- a/target/executable/workflows/quality_control/.config.vsh.yaml +++ b/target/executable/workflows/quality_control/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "quality_control" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -1596,8 +1596,8 @@ build_info: output: "target/executable/workflows/quality_control" executable: "target/executable/workflows/quality_control/quality_control" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/nextflow/rseqc/rseqc_bamstat" - "target/nextflow/rseqc/rseqc_inferexperiment" @@ -1618,7 +1618,7 @@ build_info: - "target/nextflow/rsem/rsem_merge_counts" - "target/nextflow/workflows/merge_quant_results" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -1640,5 +1640,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/workflows/quality_control/quality_control b/target/executable/workflows/quality_control/quality_control index dc45a7b..172bd6f 100755 --- a/target/executable/workflows/quality_control/quality_control +++ b/target/executable/workflows/quality_control/quality_control @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# quality_control v0.1 +# quality_control v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "quality_control v0.1" + echo "quality_control v0.1.0" echo "" echo "A subworkflow for the final quality control stage of the nf-core/rnaseq" echo "pipeline." @@ -834,7 +834,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "quality_control v0.1" + echo "quality_control v0.1.0" exit ;; --id) diff --git a/target/executable/workflows/rnaseq/.config.vsh.yaml b/target/executable/workflows/rnaseq/.config.vsh.yaml index 987afe9..79c02d5 100644 --- a/target/executable/workflows/rnaseq/.config.vsh.yaml +++ b/target/executable/workflows/rnaseq/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rnaseq" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -2117,8 +2117,8 @@ build_info: output: "target/executable/workflows/rnaseq" executable: "target/executable/workflows/rnaseq/rnaseq" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/nextflow/workflows/prepare_genome" - "target/nextflow/cat_fastq" @@ -2128,7 +2128,7 @@ build_info: - "target/nextflow/workflows/post_processing" - "target/nextflow/workflows/quality_control" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -2150,5 +2150,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/executable/workflows/rnaseq/rnaseq b/target/executable/workflows/rnaseq/rnaseq index a0ce2f9..f823219 100755 --- a/target/executable/workflows/rnaseq/rnaseq +++ b/target/executable/workflows/rnaseq/rnaseq @@ -1,6 +1,6 @@ #!/usr/bin/env bash -# rnaseq v0.1 +# rnaseq v0.1.0 # # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP" # ViashHelp: Display helpful explanation about this executable function ViashHelp { - echo "rnaseq v0.1" + echo "rnaseq v0.1.0" echo "" echo "A viash workflow for the nf-core/rnaseq pipeline." echo "" @@ -1093,7 +1093,7 @@ while [[ $# -gt 0 ]]; do shift 1 ;; --version) - echo "rnaseq v0.1" + echo "rnaseq v0.1.0" exit ;; --id) diff --git a/target/nextflow/bbmap_bbsplit/.config.vsh.yaml b/target/nextflow/bbmap_bbsplit/.config.vsh.yaml index e991a3a..1a9a98e 100644 --- a/target/nextflow/bbmap_bbsplit/.config.vsh.yaml +++ b/target/nextflow/bbmap_bbsplit/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "bbmap_bbsplit" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -219,7 +219,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -238,10 +238,10 @@ build_info: output: "target/nextflow/bbmap_bbsplit" executable: "target/nextflow/bbmap_bbsplit/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -263,5 +263,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/bbmap_bbsplit/main.nf b/target/nextflow/bbmap_bbsplit/main.nf index 16c7e93..33a4455 100644 --- a/target/nextflow/bbmap_bbsplit/main.nf +++ b/target/nextflow/bbmap_bbsplit/main.nf @@ -1,4 +1,4 @@ -// bbmap_bbsplit v0.1 +// bbmap_bbsplit v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "bbmap_bbsplit", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3082,7 +3082,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3104,11 +3104,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/bbmap_bbsplit", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3138,7 +3138,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3612,7 +3612,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/bbmap_bbsplit", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/bbmap_bbsplit/nextflow.config b/target/nextflow/bbmap_bbsplit/nextflow.config index d00df4f..c9eaaea 100644 --- a/target/nextflow/bbmap_bbsplit/nextflow.config +++ b/target/nextflow/bbmap_bbsplit/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'bbmap_bbsplit' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Split sequencing reads by mapping them to multiple references simultaneously.\n' } diff --git a/target/nextflow/bedtools_genomecov/.config.vsh.yaml b/target/nextflow/bedtools_genomecov/.config.vsh.yaml index 12e816b..04a60d9 100644 --- a/target/nextflow/bedtools_genomecov/.config.vsh.yaml +++ b/target/nextflow/bedtools_genomecov/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "bedtools_genomecov" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -159,7 +159,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -178,10 +178,10 @@ build_info: output: "target/nextflow/bedtools_genomecov" executable: "target/nextflow/bedtools_genomecov/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -203,5 +203,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/bedtools_genomecov/main.nf b/target/nextflow/bedtools_genomecov/main.nf index 9746cc6..579f21a 100644 --- a/target/nextflow/bedtools_genomecov/main.nf +++ b/target/nextflow/bedtools_genomecov/main.nf @@ -1,4 +1,4 @@ -// bedtools_genomecov v0.1 +// bedtools_genomecov v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "bedtools_genomecov", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3009,7 +3009,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3031,11 +3031,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/bedtools_genomecov", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3065,7 +3065,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3494,7 +3494,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/bedtools_genomecov", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/bedtools_genomecov/nextflow.config b/target/nextflow/bedtools_genomecov/nextflow.config index 37857a5..5e6c346 100644 --- a/target/nextflow/bedtools_genomecov/nextflow.config +++ b/target/nextflow/bedtools_genomecov/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'bedtools_genomecov' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Compute BEDGRAPH (-bg) summaries of feature coverage' } diff --git a/target/nextflow/cat_additional_fasta/.config.vsh.yaml b/target/nextflow/cat_additional_fasta/.config.vsh.yaml index 86bc223..a8cd394 100644 --- a/target/nextflow/cat_additional_fasta/.config.vsh.yaml +++ b/target/nextflow/cat_additional_fasta/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "cat_additional_fasta" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -169,7 +169,7 @@ engines: id: "docker" image: "python" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" entrypoint: [] cmd: null @@ -182,10 +182,10 @@ build_info: output: "target/nextflow/cat_additional_fasta" executable: "target/nextflow/cat_additional_fasta/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -207,5 +207,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/cat_additional_fasta/main.nf b/target/nextflow/cat_additional_fasta/main.nf index 0551d19..9825abe 100644 --- a/target/nextflow/cat_additional_fasta/main.nf +++ b/target/nextflow/cat_additional_fasta/main.nf @@ -1,4 +1,4 @@ -// cat_additional_fasta v0.1 +// cat_additional_fasta v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "cat_additional_fasta", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3018,7 +3018,7 @@ meta = [ "id" : "docker", "image" : "python", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/" }, { @@ -3032,11 +3032,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/cat_additional_fasta", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3066,7 +3066,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3545,7 +3545,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/cat_additional_fasta", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/cat_additional_fasta/nextflow.config b/target/nextflow/cat_additional_fasta/nextflow.config index 03bf631..c1df99a 100644 --- a/target/nextflow/cat_additional_fasta/nextflow.config +++ b/target/nextflow/cat_additional_fasta/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'cat_additional_fasta' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Concatenate addional fasta file to reference FASTA and GTF files.\n' } diff --git a/target/nextflow/cat_fastq/.config.vsh.yaml b/target/nextflow/cat_fastq/.config.vsh.yaml index dd97ae4..93b3f8c 100644 --- a/target/nextflow/cat_fastq/.config.vsh.yaml +++ b/target/nextflow/cat_fastq/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "cat_fastq" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -156,7 +156,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" entrypoint: [] cmd: null @@ -169,10 +169,10 @@ build_info: output: "target/nextflow/cat_fastq" executable: "target/nextflow/cat_fastq/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -194,5 +194,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/cat_fastq/main.nf b/target/nextflow/cat_fastq/main.nf index 94d7859..c650041 100644 --- a/target/nextflow/cat_fastq/main.nf +++ b/target/nextflow/cat_fastq/main.nf @@ -1,4 +1,4 @@ -// cat_fastq v0.1 +// cat_fastq v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "cat_fastq", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3009,7 +3009,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/" }, { @@ -3023,11 +3023,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/cat_fastq", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3057,7 +3057,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3480,7 +3480,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/cat_fastq", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/cat_fastq/nextflow.config b/target/nextflow/cat_fastq/nextflow.config index 277108a..8ccc791 100644 --- a/target/nextflow/cat_fastq/nextflow.config +++ b/target/nextflow/cat_fastq/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'cat_fastq' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Concatenate multiple fastq files' } diff --git a/target/nextflow/deseq2_qc/.config.vsh.yaml b/target/nextflow/deseq2_qc/.config.vsh.yaml index 928d01f..0126dfd 100644 --- a/target/nextflow/deseq2_qc/.config.vsh.yaml +++ b/target/nextflow/deseq2_qc/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "deseq2_qc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "input" arguments: @@ -207,7 +207,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -239,10 +239,10 @@ build_info: output: "target/nextflow/deseq2_qc" executable: "target/nextflow/deseq2_qc/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -264,5 +264,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/deseq2_qc/main.nf b/target/nextflow/deseq2_qc/main.nf index 9a5ed06..61dbf77 100644 --- a/target/nextflow/deseq2_qc/main.nf +++ b/target/nextflow/deseq2_qc/main.nf @@ -1,4 +1,4 @@ -// deseq2_qc v0.1 +// deseq2_qc v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "deseq2_qc", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "input", @@ -3070,7 +3070,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3112,11 +3112,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/deseq2_qc", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3146,7 +3146,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3602,7 +3602,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/deseq2_qc", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/deseq2_qc/nextflow.config b/target/nextflow/deseq2_qc/nextflow.config index a2d8aac..20283cc 100644 --- a/target/nextflow/deseq2_qc/nextflow.config +++ b/target/nextflow/deseq2_qc/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'deseq2_qc' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'run deseq2, perform pca, generate heatmaps and scatterplots for samples in the counts files\n' } diff --git a/target/nextflow/dupradar/.config.vsh.yaml b/target/nextflow/dupradar/.config.vsh.yaml index 553cb68..8d9b09a 100644 --- a/target/nextflow/dupradar/.config.vsh.yaml +++ b/target/nextflow/dupradar/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "dupradar" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -244,7 +244,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -266,10 +266,10 @@ build_info: output: "target/nextflow/dupradar" executable: "target/nextflow/dupradar/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -291,5 +291,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/dupradar/main.nf b/target/nextflow/dupradar/main.nf index 3066c2b..d171bd7 100644 --- a/target/nextflow/dupradar/main.nf +++ b/target/nextflow/dupradar/main.nf @@ -1,4 +1,4 @@ -// dupradar v0.1 +// dupradar v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "dupradar", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3106,7 +3106,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3136,11 +3136,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/dupradar", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3170,7 +3170,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3609,7 +3609,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/dupradar", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/dupradar/nextflow.config b/target/nextflow/dupradar/nextflow.config index 42c3794..271471f 100644 --- a/target/nextflow/dupradar/nextflow.config +++ b/target/nextflow/dupradar/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'dupradar' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Assessment of duplication rates in RNA-Seq datasets\n' } diff --git a/target/nextflow/fastqc/.config.vsh.yaml b/target/nextflow/fastqc/.config.vsh.yaml index 83c4588..a6adc46 100644 --- a/target/nextflow/fastqc/.config.vsh.yaml +++ b/target/nextflow/fastqc/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "fastqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -180,7 +180,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -198,10 +198,10 @@ build_info: output: "target/nextflow/fastqc" executable: "target/nextflow/fastqc/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -223,5 +223,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/fastqc/main.nf b/target/nextflow/fastqc/main.nf index 472599f..264e60b 100644 --- a/target/nextflow/fastqc/main.nf +++ b/target/nextflow/fastqc/main.nf @@ -1,4 +1,4 @@ -// fastqc v0.1 +// fastqc v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "fastqc", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3033,7 +3033,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3056,11 +3056,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/fastqc", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3090,7 +3090,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3536,7 +3536,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/fastqc", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/fastqc/nextflow.config b/target/nextflow/fastqc/nextflow.config index d702244..eccbd33 100644 --- a/target/nextflow/fastqc/nextflow.config +++ b/target/nextflow/fastqc/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'fastqc' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Fastqc component, please see https://www.bioinformatics.babraham.ac.uk/projects/fastqc/. This component can take one or more files (by means of shell globbing) or a complete directory.\n' } diff --git a/target/nextflow/fq_subsample/.config.vsh.yaml b/target/nextflow/fq_subsample/.config.vsh.yaml index f484da2..cc5106c 100644 --- a/target/nextflow/fq_subsample/.config.vsh.yaml +++ b/target/nextflow/fq_subsample/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "fq_subsample" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -153,7 +153,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -177,10 +177,10 @@ build_info: output: "target/nextflow/fq_subsample" executable: "target/nextflow/fq_subsample/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -202,5 +202,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/fq_subsample/main.nf b/target/nextflow/fq_subsample/main.nf index 181e410..58050a3 100644 --- a/target/nextflow/fq_subsample/main.nf +++ b/target/nextflow/fq_subsample/main.nf @@ -1,4 +1,4 @@ -// fq_subsample v0.1 +// fq_subsample v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "fq_subsample", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3002,7 +3002,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3027,11 +3027,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/fq_subsample", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3061,7 +3061,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3487,7 +3487,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/fq_subsample", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/fq_subsample/nextflow.config b/target/nextflow/fq_subsample/nextflow.config index 6772b33..2992f55 100644 --- a/target/nextflow/fq_subsample/nextflow.config +++ b/target/nextflow/fq_subsample/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'fq_subsample' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'fq subsample outputs a subset of records from single or paired FASTQ files. This requires a seed (--seed) to be set in ext.args\n' } diff --git a/target/nextflow/getchromsizes/.config.vsh.yaml b/target/nextflow/getchromsizes/.config.vsh.yaml index 432d312..f52214c 100644 --- a/target/nextflow/getchromsizes/.config.vsh.yaml +++ b/target/nextflow/getchromsizes/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "getchromsizes" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -146,7 +146,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -167,10 +167,10 @@ build_info: output: "target/nextflow/getchromsizes" executable: "target/nextflow/getchromsizes/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -192,5 +192,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/getchromsizes/main.nf b/target/nextflow/getchromsizes/main.nf index e6434d5..0887fff 100644 --- a/target/nextflow/getchromsizes/main.nf +++ b/target/nextflow/getchromsizes/main.nf @@ -1,4 +1,4 @@ -// getchromsizes v0.1 +// getchromsizes v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "getchromsizes", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2991,7 +2991,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3013,11 +3013,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/getchromsizes", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3047,7 +3047,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3459,7 +3459,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/getchromsizes", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/getchromsizes/nextflow.config b/target/nextflow/getchromsizes/nextflow.config index f60eda8..c35e15b 100644 --- a/target/nextflow/getchromsizes/nextflow.config +++ b/target/nextflow/getchromsizes/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'getchromsizes' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Generates a FASTA file of chromosome sizes and a fasta index file.\n' } diff --git a/target/nextflow/gtf2bed/.config.vsh.yaml b/target/nextflow/gtf2bed/.config.vsh.yaml index 7a17f2e..ea534d7 100644 --- a/target/nextflow/gtf2bed/.config.vsh.yaml +++ b/target/nextflow/gtf2bed/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "gtf2bed" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -127,7 +127,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -145,10 +145,10 @@ build_info: output: "target/nextflow/gtf2bed" executable: "target/nextflow/gtf2bed/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -170,5 +170,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/gtf2bed/main.nf b/target/nextflow/gtf2bed/main.nf index a55c37d..082c423 100644 --- a/target/nextflow/gtf2bed/main.nf +++ b/target/nextflow/gtf2bed/main.nf @@ -1,4 +1,4 @@ -// gtf2bed v0.1 +// gtf2bed v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "gtf2bed", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2972,7 +2972,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -2995,11 +2995,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/gtf2bed", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3029,7 +3029,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3435,7 +3435,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/gtf2bed", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/gtf2bed/nextflow.config b/target/nextflow/gtf2bed/nextflow.config index cc81807..8007fc4 100644 --- a/target/nextflow/gtf2bed/nextflow.config +++ b/target/nextflow/gtf2bed/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'gtf2bed' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Create BED annotation file from GTF.\n' } diff --git a/target/nextflow/gtf_filter/.config.vsh.yaml b/target/nextflow/gtf_filter/.config.vsh.yaml index e094462..297cace 100644 --- a/target/nextflow/gtf_filter/.config.vsh.yaml +++ b/target/nextflow/gtf_filter/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "gtf_filter" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -142,7 +142,7 @@ engines: id: "docker" image: "python" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" entrypoint: [] cmd: null @@ -155,10 +155,10 @@ build_info: output: "target/nextflow/gtf_filter" executable: "target/nextflow/gtf_filter/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -180,5 +180,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/gtf_filter/main.nf b/target/nextflow/gtf_filter/main.nf index 173499d..917c4c7 100644 --- a/target/nextflow/gtf_filter/main.nf +++ b/target/nextflow/gtf_filter/main.nf @@ -1,4 +1,4 @@ -// gtf_filter v0.1 +// gtf_filter v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "gtf_filter", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2989,7 +2989,7 @@ meta = [ "id" : "docker", "image" : "python", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/" }, { @@ -3003,11 +3003,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/gtf_filter", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3037,7 +3037,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3494,7 +3494,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/gtf_filter", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/gtf_filter/nextflow.config b/target/nextflow/gtf_filter/nextflow.config index a34dea1..57f08e7 100644 --- a/target/nextflow/gtf_filter/nextflow.config +++ b/target/nextflow/gtf_filter/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'gtf_filter' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Filters a GTF file based on sequence names in a FASTA file.\n' } diff --git a/target/nextflow/gunzip/.config.vsh.yaml b/target/nextflow/gunzip/.config.vsh.yaml index e9e1b0c..e904567 100644 --- a/target/nextflow/gunzip/.config.vsh.yaml +++ b/target/nextflow/gunzip/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "gunzip" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -126,7 +126,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -144,10 +144,10 @@ build_info: output: "target/nextflow/gunzip" executable: "target/nextflow/gunzip/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -169,5 +169,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/gunzip/main.nf b/target/nextflow/gunzip/main.nf index 78ae73e..1151b1a 100644 --- a/target/nextflow/gunzip/main.nf +++ b/target/nextflow/gunzip/main.nf @@ -1,4 +1,4 @@ -// gunzip v0.1 +// gunzip v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "gunzip", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2969,7 +2969,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -2992,11 +2992,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/gunzip", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3026,7 +3026,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3438,7 +3438,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/gunzip", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/gunzip/nextflow.config b/target/nextflow/gunzip/nextflow.config index 109b552..e6ce83a 100644 --- a/target/nextflow/gunzip/nextflow.config +++ b/target/nextflow/gunzip/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'gunzip' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Compress or uncompress a file or list of files.\n' } diff --git a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml index fc02637..63d2c8e 100644 --- a/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml +++ b/target/nextflow/kallisto/kallisto_index/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "kallisto_index" namespace: "kallisto" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -135,7 +135,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -155,10 +155,10 @@ build_info: output: "target/nextflow/kallisto/kallisto_index" executable: "target/nextflow/kallisto/kallisto_index/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -180,5 +180,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/kallisto/kallisto_index/main.nf b/target/nextflow/kallisto/kallisto_index/main.nf index 30d7e5d..07ff0fd 100644 --- a/target/nextflow/kallisto/kallisto_index/main.nf +++ b/target/nextflow/kallisto/kallisto_index/main.nf @@ -1,4 +1,4 @@ -// kallisto_index v0.1 +// kallisto_index v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "kallisto_index", "namespace" : "kallisto", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2980,7 +2980,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3002,11 +3002,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/kallisto/kallisto_index", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3036,7 +3036,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3446,7 +3446,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/kallisto/kallisto_index", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/kallisto/kallisto_index/nextflow.config b/target/nextflow/kallisto/kallisto_index/nextflow.config index ab450ab..12f5f02 100644 --- a/target/nextflow/kallisto/kallisto_index/nextflow.config +++ b/target/nextflow/kallisto/kallisto_index/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'kallisto/kallisto_index' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Create Kallisto index.\n' } diff --git a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml index 3a18e4f..b24179a 100644 --- a/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml +++ b/target/nextflow/kallisto/kallisto_quant/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "kallisto_quant" namespace: "kallisto" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -233,7 +233,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -253,10 +253,10 @@ build_info: output: "target/nextflow/kallisto/kallisto_quant" executable: "target/nextflow/kallisto/kallisto_quant/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -278,5 +278,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/kallisto/kallisto_quant/main.nf b/target/nextflow/kallisto/kallisto_quant/main.nf index b5702de..f85ac61 100644 --- a/target/nextflow/kallisto/kallisto_quant/main.nf +++ b/target/nextflow/kallisto/kallisto_quant/main.nf @@ -1,4 +1,4 @@ -// kallisto_quant v0.1 +// kallisto_quant v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "kallisto_quant", "namespace" : "kallisto", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3092,7 +3092,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3114,11 +3114,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/kallisto/kallisto_quant", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3148,7 +3148,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3599,7 +3599,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/kallisto/kallisto_quant", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/kallisto/kallisto_quant/nextflow.config b/target/nextflow/kallisto/kallisto_quant/nextflow.config index 7473bb7..f767733 100644 --- a/target/nextflow/kallisto/kallisto_quant/nextflow.config +++ b/target/nextflow/kallisto/kallisto_quant/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'kallisto/kallisto_quant' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Computes equivalence classes for reads and quantifies abundances.\n' } diff --git a/target/nextflow/multiqc_custom_biotype/.config.vsh.yaml b/target/nextflow/multiqc_custom_biotype/.config.vsh.yaml index 0f7bcef..864a524 100644 --- a/target/nextflow/multiqc_custom_biotype/.config.vsh.yaml +++ b/target/nextflow/multiqc_custom_biotype/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "multiqc_custom_biotype" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -152,7 +152,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -173,10 +173,10 @@ build_info: output: "target/nextflow/multiqc_custom_biotype" executable: "target/nextflow/multiqc_custom_biotype/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -198,5 +198,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/multiqc_custom_biotype/main.nf b/target/nextflow/multiqc_custom_biotype/main.nf index c8b0577..c02e457 100644 --- a/target/nextflow/multiqc_custom_biotype/main.nf +++ b/target/nextflow/multiqc_custom_biotype/main.nf @@ -1,4 +1,4 @@ -// multiqc_custom_biotype v0.1 +// multiqc_custom_biotype v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "multiqc_custom_biotype", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2997,7 +2997,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3025,11 +3025,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/multiqc_custom_biotype", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3059,7 +3059,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3474,7 +3474,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/multiqc_custom_biotype", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/multiqc_custom_biotype/nextflow.config b/target/nextflow/multiqc_custom_biotype/nextflow.config index b4293a1..8f0a455 100644 --- a/target/nextflow/multiqc_custom_biotype/nextflow.config +++ b/target/nextflow/multiqc_custom_biotype/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'multiqc_custom_biotype' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Calculate features percentage for biotype counts' } diff --git a/target/nextflow/picard_markduplicates/.config.vsh.yaml b/target/nextflow/picard_markduplicates/.config.vsh.yaml index b9b12cd..f69c977 100644 --- a/target/nextflow/picard_markduplicates/.config.vsh.yaml +++ b/target/nextflow/picard_markduplicates/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "picard_markduplicates" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -186,7 +186,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -207,10 +207,10 @@ build_info: output: "target/nextflow/picard_markduplicates" executable: "target/nextflow/picard_markduplicates/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -232,5 +232,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/picard_markduplicates/main.nf b/target/nextflow/picard_markduplicates/main.nf index f1b7ab2..94e838b 100644 --- a/target/nextflow/picard_markduplicates/main.nf +++ b/target/nextflow/picard_markduplicates/main.nf @@ -1,4 +1,4 @@ -// picard_markduplicates v0.1 +// picard_markduplicates v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "picard_markduplicates", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3038,7 +3038,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3063,11 +3063,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/picard_markduplicates", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3097,7 +3097,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3520,7 +3520,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/picard_markduplicates", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/picard_markduplicates/nextflow.config b/target/nextflow/picard_markduplicates/nextflow.config index 5933bc3..a7e7149 100644 --- a/target/nextflow/picard_markduplicates/nextflow.config +++ b/target/nextflow/picard_markduplicates/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'picard_markduplicates' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Locate and tag duplicate reads in a BAM file\n' } diff --git a/target/nextflow/prepare_multiqc_input/.config.vsh.yaml b/target/nextflow/prepare_multiqc_input/.config.vsh.yaml index 1bc8c8f..c430d24 100644 --- a/target/nextflow/prepare_multiqc_input/.config.vsh.yaml +++ b/target/nextflow/prepare_multiqc_input/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "prepare_multiqc_input" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -396,7 +396,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" entrypoint: [] cmd: null @@ -409,10 +409,10 @@ build_info: output: "target/nextflow/prepare_multiqc_input" executable: "target/nextflow/prepare_multiqc_input/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -434,5 +434,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/prepare_multiqc_input/main.nf b/target/nextflow/prepare_multiqc_input/main.nf index 2cda383..f92dee0 100644 --- a/target/nextflow/prepare_multiqc_input/main.nf +++ b/target/nextflow/prepare_multiqc_input/main.nf @@ -1,4 +1,4 @@ -// prepare_multiqc_input v0.1 +// prepare_multiqc_input v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "prepare_multiqc_input", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3263,7 +3263,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/" }, { @@ -3277,11 +3277,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/prepare_multiqc_input", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3311,7 +3311,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3817,7 +3817,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/prepare_multiqc_input", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/prepare_multiqc_input/nextflow.config b/target/nextflow/prepare_multiqc_input/nextflow.config index 4b0d787..35cf4b6 100644 --- a/target/nextflow/prepare_multiqc_input/nextflow.config +++ b/target/nextflow/prepare_multiqc_input/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'prepare_multiqc_input' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Prepare directory with all the input files for MultiQC.\n' } diff --git a/target/nextflow/preprocess_transcripts_fasta/.config.vsh.yaml b/target/nextflow/preprocess_transcripts_fasta/.config.vsh.yaml index 107446d..2738b1b 100644 --- a/target/nextflow/preprocess_transcripts_fasta/.config.vsh.yaml +++ b/target/nextflow/preprocess_transcripts_fasta/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "preprocess_transcripts_fasta" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -125,7 +125,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" entrypoint: [] cmd: null @@ -138,10 +138,10 @@ build_info: output: "target/nextflow/preprocess_transcripts_fasta" executable: "target/nextflow/preprocess_transcripts_fasta/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -163,5 +163,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/preprocess_transcripts_fasta/main.nf b/target/nextflow/preprocess_transcripts_fasta/main.nf index a2cf156..eea3cfb 100644 --- a/target/nextflow/preprocess_transcripts_fasta/main.nf +++ b/target/nextflow/preprocess_transcripts_fasta/main.nf @@ -1,4 +1,4 @@ -// preprocess_transcripts_fasta v0.1 +// preprocess_transcripts_fasta v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "preprocess_transcripts_fasta", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2968,7 +2968,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/" }, { @@ -2982,11 +2982,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/preprocess_transcripts_fasta", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3016,7 +3016,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3428,7 +3428,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/preprocess_transcripts_fasta", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/preprocess_transcripts_fasta/nextflow.config b/target/nextflow/preprocess_transcripts_fasta/nextflow.config index 7ac149c..e03288e 100644 --- a/target/nextflow/preprocess_transcripts_fasta/nextflow.config +++ b/target/nextflow/preprocess_transcripts_fasta/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'preprocess_transcripts_fasta' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Process transcripts FASTA if GTF file is GENOCODE format\n' } diff --git a/target/nextflow/preseq_lcextrap/.config.vsh.yaml b/target/nextflow/preseq_lcextrap/.config.vsh.yaml index 8cf1d1a..6bf5ebe 100644 --- a/target/nextflow/preseq_lcextrap/.config.vsh.yaml +++ b/target/nextflow/preseq_lcextrap/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "preseq_lcextrap" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -146,7 +146,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -191,10 +191,10 @@ build_info: output: "target/nextflow/preseq_lcextrap" executable: "target/nextflow/preseq_lcextrap/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -216,5 +216,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/preseq_lcextrap/main.nf b/target/nextflow/preseq_lcextrap/main.nf index 4392c6a..f8c4c28 100644 --- a/target/nextflow/preseq_lcextrap/main.nf +++ b/target/nextflow/preseq_lcextrap/main.nf @@ -1,4 +1,4 @@ -// preseq_lcextrap v0.1 +// preseq_lcextrap v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "preseq_lcextrap", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2992,7 +2992,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3035,11 +3035,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/preseq_lcextrap", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3069,7 +3069,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3501,7 +3501,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/preseq_lcextrap", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/preseq_lcextrap/nextflow.config b/target/nextflow/preseq_lcextrap/nextflow.config index 9853d39..d37019e 100644 --- a/target/nextflow/preseq_lcextrap/nextflow.config +++ b/target/nextflow/preseq_lcextrap/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'preseq_lcextrap' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Computing the expected future yield of distinct reads and bounds on the number of total distinct reads in the library and the associated confidence intervals.' } diff --git a/target/nextflow/qualimap/.config.vsh.yaml b/target/nextflow/qualimap/.config.vsh.yaml index f87ad9d..6bd5c3d 100644 --- a/target/nextflow/qualimap/.config.vsh.yaml +++ b/target/nextflow/qualimap/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "qualimap" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -237,7 +237,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -271,10 +271,10 @@ build_info: output: "target/nextflow/qualimap" executable: "target/nextflow/qualimap/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -296,5 +296,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/qualimap/main.nf b/target/nextflow/qualimap/main.nf index 2bfa85f..69d65cf 100644 --- a/target/nextflow/qualimap/main.nf +++ b/target/nextflow/qualimap/main.nf @@ -1,4 +1,4 @@ -// qualimap v0.1 +// qualimap v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "qualimap", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3100,7 +3100,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3144,11 +3144,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/qualimap", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3178,7 +3178,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3607,7 +3607,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/qualimap", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/qualimap/nextflow.config b/target/nextflow/qualimap/nextflow.config index 8aafc1b..2e94683 100644 --- a/target/nextflow/qualimap/nextflow.config +++ b/target/nextflow/qualimap/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'qualimap' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'RNA-seq QC analysis using the qualimap \n' } diff --git a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml index 6bc06f8..f640c7d 100644 --- a/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml +++ b/target/nextflow/rsem/rsem_calculate_expression/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rsem_calculate_expression" namespace: "rsem" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -251,7 +251,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -299,10 +299,10 @@ build_info: output: "target/nextflow/rsem/rsem_calculate_expression" executable: "target/nextflow/rsem/rsem_calculate_expression/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -324,5 +324,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/rsem/rsem_calculate_expression/main.nf b/target/nextflow/rsem/rsem_calculate_expression/main.nf index 03033fa..f394405 100644 --- a/target/nextflow/rsem/rsem_calculate_expression/main.nf +++ b/target/nextflow/rsem/rsem_calculate_expression/main.nf @@ -1,4 +1,4 @@ -// rsem_calculate_expression v0.1 +// rsem_calculate_expression v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "rsem_calculate_expression", "namespace" : "rsem", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3117,7 +3117,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3163,11 +3163,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/rsem/rsem_calculate_expression", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3197,7 +3197,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3648,7 +3648,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/rsem/rsem_calculate_expression", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/rsem/rsem_calculate_expression/nextflow.config b/target/nextflow/rsem/rsem_calculate_expression/nextflow.config index 627d28e..5623294 100644 --- a/target/nextflow/rsem/rsem_calculate_expression/nextflow.config +++ b/target/nextflow/rsem/rsem_calculate_expression/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'rsem/rsem_calculate_expression' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Calculate expression with RSEM.\n' } diff --git a/target/nextflow/rsem/rsem_merge_counts/.config.vsh.yaml b/target/nextflow/rsem/rsem_merge_counts/.config.vsh.yaml index e2e6d9c..76e0f6c 100644 --- a/target/nextflow/rsem/rsem_merge_counts/.config.vsh.yaml +++ b/target/nextflow/rsem/rsem_merge_counts/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rsem_merge_counts" namespace: "rsem" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -169,7 +169,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" entrypoint: [] cmd: null @@ -182,10 +182,10 @@ build_info: output: "target/nextflow/rsem/rsem_merge_counts" executable: "target/nextflow/rsem/rsem_merge_counts/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -207,5 +207,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/rsem/rsem_merge_counts/main.nf b/target/nextflow/rsem/rsem_merge_counts/main.nf index f378230..4ee6a29 100644 --- a/target/nextflow/rsem/rsem_merge_counts/main.nf +++ b/target/nextflow/rsem/rsem_merge_counts/main.nf @@ -1,4 +1,4 @@ -// rsem_merge_counts v0.1 +// rsem_merge_counts v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "rsem_merge_counts", "namespace" : "rsem", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3014,7 +3014,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/" }, { @@ -3028,11 +3028,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/rsem/rsem_merge_counts", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3062,7 +3062,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3495,7 +3495,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/rsem/rsem_merge_counts", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/rsem/rsem_merge_counts/nextflow.config b/target/nextflow/rsem/rsem_merge_counts/nextflow.config index bb4de55..f6cc7fd 100644 --- a/target/nextflow/rsem/rsem_merge_counts/nextflow.config +++ b/target/nextflow/rsem/rsem_merge_counts/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'rsem/rsem_merge_counts' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Merge the transcript quantification results obtained from rsem calculate-expression across all samples.\n' } diff --git a/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml index 76b5a8e..f7aeb11 100644 --- a/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_bamstat" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -140,7 +140,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -163,10 +163,10 @@ build_info: output: "target/nextflow/rseqc/rseqc_bamstat" executable: "target/nextflow/rseqc/rseqc_bamstat/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -188,5 +188,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/rseqc/rseqc_bamstat/main.nf b/target/nextflow/rseqc/rseqc_bamstat/main.nf index c9f8485..86ffe55 100644 --- a/target/nextflow/rseqc/rseqc_bamstat/main.nf +++ b/target/nextflow/rseqc/rseqc_bamstat/main.nf @@ -1,4 +1,4 @@ -// rseqc_bamstat v0.1 +// rseqc_bamstat v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "rseqc_bamstat", "namespace" : "rseqc", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2985,7 +2985,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3016,11 +3016,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_bamstat", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3050,7 +3050,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3460,7 +3460,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/rseqc/rseqc_bamstat", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/rseqc/rseqc_bamstat/nextflow.config b/target/nextflow/rseqc/rseqc_bamstat/nextflow.config index 5d8adcc..df0ba21 100644 --- a/target/nextflow/rseqc/rseqc_bamstat/nextflow.config +++ b/target/nextflow/rseqc/rseqc_bamstat/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'rseqc/rseqc_bamstat' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Generate statistics from a bam file.\n' } diff --git a/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml index 3e2698b..1a3be9a 100644 --- a/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_inferexperiment" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -163,7 +163,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -186,10 +186,10 @@ build_info: output: "target/nextflow/rseqc/rseqc_inferexperiment" executable: "target/nextflow/rseqc/rseqc_inferexperiment/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -211,5 +211,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/rseqc/rseqc_inferexperiment/main.nf b/target/nextflow/rseqc/rseqc_inferexperiment/main.nf index 3fda05a..481dafc 100644 --- a/target/nextflow/rseqc/rseqc_inferexperiment/main.nf +++ b/target/nextflow/rseqc/rseqc_inferexperiment/main.nf @@ -1,4 +1,4 @@ -// rseqc_inferexperiment v0.1 +// rseqc_inferexperiment v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "rseqc_inferexperiment", "namespace" : "rseqc", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3013,7 +3013,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3044,11 +3044,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_inferexperiment", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3078,7 +3078,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3492,7 +3492,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/rseqc/rseqc_inferexperiment", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/rseqc/rseqc_inferexperiment/nextflow.config b/target/nextflow/rseqc/rseqc_inferexperiment/nextflow.config index ffd07a0..b737f70 100644 --- a/target/nextflow/rseqc/rseqc_inferexperiment/nextflow.config +++ b/target/nextflow/rseqc/rseqc_inferexperiment/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'rseqc/rseqc_inferexperiment' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Infer strandedness from sequencing reads\n' } diff --git a/target/nextflow/rseqc/rseqc_innerdistance/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_innerdistance/.config.vsh.yaml index 63e799b..bbfffc2 100644 --- a/target/nextflow/rseqc/rseqc_innerdistance/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_innerdistance/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_innerdistance" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -248,7 +248,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -272,10 +272,10 @@ build_info: output: "target/nextflow/rseqc/rseqc_innerdistance" executable: "target/nextflow/rseqc/rseqc_innerdistance/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -297,5 +297,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/rseqc/rseqc_innerdistance/main.nf b/target/nextflow/rseqc/rseqc_innerdistance/main.nf index 10f1f8e..82641a6 100644 --- a/target/nextflow/rseqc/rseqc_innerdistance/main.nf +++ b/target/nextflow/rseqc/rseqc_innerdistance/main.nf @@ -1,4 +1,4 @@ -// rseqc_innerdistance v0.1 +// rseqc_innerdistance v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "rseqc_innerdistance", "namespace" : "rseqc", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3105,7 +3105,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3137,11 +3137,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_innerdistance", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3171,7 +3171,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3605,7 +3605,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/rseqc/rseqc_innerdistance", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/rseqc/rseqc_innerdistance/nextflow.config b/target/nextflow/rseqc/rseqc_innerdistance/nextflow.config index f0d07b2..a582da4 100644 --- a/target/nextflow/rseqc/rseqc_innerdistance/nextflow.config +++ b/target/nextflow/rseqc/rseqc_innerdistance/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'rseqc/rseqc_innerdistance' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Calculate inner distance between read pairs. \n' } diff --git a/target/nextflow/rseqc/rseqc_junctionannotation/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_junctionannotation/.config.vsh.yaml index ecfeca5..8f21b47 100644 --- a/target/nextflow/rseqc/rseqc_junctionannotation/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_junctionannotation/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_junctionannotation" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -236,7 +236,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -260,10 +260,10 @@ build_info: output: "target/nextflow/rseqc/rseqc_junctionannotation" executable: "target/nextflow/rseqc/rseqc_junctionannotation/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -285,5 +285,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/rseqc/rseqc_junctionannotation/main.nf b/target/nextflow/rseqc/rseqc_junctionannotation/main.nf index c7a8329..6907db9 100644 --- a/target/nextflow/rseqc/rseqc_junctionannotation/main.nf +++ b/target/nextflow/rseqc/rseqc_junctionannotation/main.nf @@ -1,4 +1,4 @@ -// rseqc_junctionannotation v0.1 +// rseqc_junctionannotation v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "rseqc_junctionannotation", "namespace" : "rseqc", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3096,7 +3096,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3128,11 +3128,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_junctionannotation", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3162,7 +3162,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3592,7 +3592,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/rseqc/rseqc_junctionannotation", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/rseqc/rseqc_junctionannotation/nextflow.config b/target/nextflow/rseqc/rseqc_junctionannotation/nextflow.config index e2cecb5..dfb15d4 100644 --- a/target/nextflow/rseqc/rseqc_junctionannotation/nextflow.config +++ b/target/nextflow/rseqc/rseqc_junctionannotation/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'rseqc/rseqc_junctionannotation' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Compare detected splice junctions to reference gene model.\n' } diff --git a/target/nextflow/rseqc/rseqc_junctionsaturation/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_junctionsaturation/.config.vsh.yaml index c368157..e06945e 100644 --- a/target/nextflow/rseqc/rseqc_junctionsaturation/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_junctionsaturation/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_junctionsaturation" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -225,7 +225,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -249,10 +249,10 @@ build_info: output: "target/nextflow/rseqc/rseqc_junctionsaturation" executable: "target/nextflow/rseqc/rseqc_junctionsaturation/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -274,5 +274,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/rseqc/rseqc_junctionsaturation/main.nf b/target/nextflow/rseqc/rseqc_junctionsaturation/main.nf index ec7b36a..9daea77 100644 --- a/target/nextflow/rseqc/rseqc_junctionsaturation/main.nf +++ b/target/nextflow/rseqc/rseqc_junctionsaturation/main.nf @@ -1,4 +1,4 @@ -// rseqc_junctionsaturation v0.1 +// rseqc_junctionsaturation v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "rseqc_junctionsaturation", "namespace" : "rseqc", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3081,7 +3081,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3113,11 +3113,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_junctionsaturation", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3147,7 +3147,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3575,7 +3575,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/rseqc/rseqc_junctionsaturation", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/rseqc/rseqc_junctionsaturation/nextflow.config b/target/nextflow/rseqc/rseqc_junctionsaturation/nextflow.config index bf20dce..074edc3 100644 --- a/target/nextflow/rseqc/rseqc_junctionsaturation/nextflow.config +++ b/target/nextflow/rseqc/rseqc_junctionsaturation/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'rseqc/rseqc_junctionsaturation' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Compare detected splice junctions to reference gene model.\n' } diff --git a/target/nextflow/rseqc/rseqc_readdistribution/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_readdistribution/.config.vsh.yaml index 793e002..8c8bdd4 100644 --- a/target/nextflow/rseqc/rseqc_readdistribution/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_readdistribution/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_readdistribution" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -139,7 +139,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -162,10 +162,10 @@ build_info: output: "target/nextflow/rseqc/rseqc_readdistribution" executable: "target/nextflow/rseqc/rseqc_readdistribution/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -187,5 +187,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/rseqc/rseqc_readdistribution/main.nf b/target/nextflow/rseqc/rseqc_readdistribution/main.nf index 02c14a4..6c2a68c 100644 --- a/target/nextflow/rseqc/rseqc_readdistribution/main.nf +++ b/target/nextflow/rseqc/rseqc_readdistribution/main.nf @@ -1,4 +1,4 @@ -// rseqc_readdistribution v0.1 +// rseqc_readdistribution v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "rseqc_readdistribution", "namespace" : "rseqc", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2986,7 +2986,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3017,11 +3017,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_readdistribution", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3051,7 +3051,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3461,7 +3461,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/rseqc/rseqc_readdistribution", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/rseqc/rseqc_readdistribution/nextflow.config b/target/nextflow/rseqc/rseqc_readdistribution/nextflow.config index 19ca434..2cda6d4 100644 --- a/target/nextflow/rseqc/rseqc_readdistribution/nextflow.config +++ b/target/nextflow/rseqc/rseqc_readdistribution/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'rseqc/rseqc_readdistribution' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Calculate how mapped reads are distributed over genomic features.\n' } diff --git a/target/nextflow/rseqc/rseqc_readduplication/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_readduplication/.config.vsh.yaml index ce7f69d..be7be69 100644 --- a/target/nextflow/rseqc/rseqc_readduplication/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_readduplication/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_readduplication" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -187,7 +187,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -211,10 +211,10 @@ build_info: output: "target/nextflow/rseqc/rseqc_readduplication" executable: "target/nextflow/rseqc/rseqc_readduplication/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -236,5 +236,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/rseqc/rseqc_readduplication/main.nf b/target/nextflow/rseqc/rseqc_readduplication/main.nf index 8285d0f..280b856 100644 --- a/target/nextflow/rseqc/rseqc_readduplication/main.nf +++ b/target/nextflow/rseqc/rseqc_readduplication/main.nf @@ -1,4 +1,4 @@ -// rseqc_readduplication v0.1 +// rseqc_readduplication v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "rseqc_readduplication", "namespace" : "rseqc", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3039,7 +3039,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3071,11 +3071,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_readduplication", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3105,7 +3105,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3527,7 +3527,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/rseqc/rseqc_readduplication", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/rseqc/rseqc_readduplication/nextflow.config b/target/nextflow/rseqc/rseqc_readduplication/nextflow.config index b142ac5..df632d9 100644 --- a/target/nextflow/rseqc/rseqc_readduplication/nextflow.config +++ b/target/nextflow/rseqc/rseqc_readduplication/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'rseqc/rseqc_readduplication' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Calculate read duplication rate.\n' } diff --git a/target/nextflow/rseqc/rseqc_tin/.config.vsh.yaml b/target/nextflow/rseqc/rseqc_tin/.config.vsh.yaml index 8b1f81f..8a85963 100644 --- a/target/nextflow/rseqc/rseqc_tin/.config.vsh.yaml +++ b/target/nextflow/rseqc/rseqc_tin/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rseqc_tin" namespace: "rseqc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -193,7 +193,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -214,10 +214,10 @@ build_info: output: "target/nextflow/rseqc/rseqc_tin" executable: "target/nextflow/rseqc/rseqc_tin/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -239,5 +239,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/rseqc/rseqc_tin/main.nf b/target/nextflow/rseqc/rseqc_tin/main.nf index 4b787d8..106537b 100644 --- a/target/nextflow/rseqc/rseqc_tin/main.nf +++ b/target/nextflow/rseqc/rseqc_tin/main.nf @@ -1,4 +1,4 @@ -// rseqc_tin v0.1 +// rseqc_tin v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "rseqc_tin", "namespace" : "rseqc", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3047,7 +3047,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3076,11 +3076,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_tin", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3110,7 +3110,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3546,7 +3546,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/rseqc/rseqc_tin", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/rseqc/rseqc_tin/nextflow.config b/target/nextflow/rseqc/rseqc_tin/nextflow.config index c533482..3366739 100644 --- a/target/nextflow/rseqc/rseqc_tin/nextflow.config +++ b/target/nextflow/rseqc/rseqc_tin/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'rseqc/rseqc_tin' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Calculte TIN (transcript integrity number) from RNA-seq reads\n' } diff --git a/target/nextflow/sortmerna/.config.vsh.yaml b/target/nextflow/sortmerna/.config.vsh.yaml index 458026d..96c0d58 100644 --- a/target/nextflow/sortmerna/.config.vsh.yaml +++ b/target/nextflow/sortmerna/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "sortmerna" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -179,7 +179,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -198,10 +198,10 @@ build_info: output: "target/nextflow/sortmerna" executable: "target/nextflow/sortmerna/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -223,5 +223,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/sortmerna/main.nf b/target/nextflow/sortmerna/main.nf index d4bc4ab..e2b6bb0 100644 --- a/target/nextflow/sortmerna/main.nf +++ b/target/nextflow/sortmerna/main.nf @@ -1,4 +1,4 @@ -// sortmerna v0.1 +// sortmerna v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "sortmerna", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3028,7 +3028,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3050,11 +3050,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/sortmerna", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3084,7 +3084,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3530,7 +3530,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/sortmerna", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/sortmerna/nextflow.config b/target/nextflow/sortmerna/nextflow.config index 3585dac..9f010b6 100644 --- a/target/nextflow/sortmerna/nextflow.config +++ b/target/nextflow/sortmerna/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'sortmerna' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Local sequence alignment tool for filtering, mapping and clustering. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. SortMeRNA takes as input files of reads (fasta, fastq, fasta.gz, fastq.gz) and one or multiple rRNA database file(s), and sorts apart aligned and rejected reads into two files.\n' } diff --git a/target/nextflow/stringtie/.config.vsh.yaml b/target/nextflow/stringtie/.config.vsh.yaml index 92abaaa..87c0bd7 100644 --- a/target/nextflow/stringtie/.config.vsh.yaml +++ b/target/nextflow/stringtie/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "stringtie" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -196,7 +196,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -216,10 +216,10 @@ build_info: output: "target/nextflow/stringtie" executable: "target/nextflow/stringtie/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -241,5 +241,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/stringtie/main.nf b/target/nextflow/stringtie/main.nf index 414de4c..c5ac323 100644 --- a/target/nextflow/stringtie/main.nf +++ b/target/nextflow/stringtie/main.nf @@ -1,4 +1,4 @@ -// stringtie v0.1 +// stringtie v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "stringtie", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3051,7 +3051,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3073,11 +3073,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/stringtie", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3107,7 +3107,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3540,7 +3540,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/stringtie", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/stringtie/nextflow.config b/target/nextflow/stringtie/nextflow.config index 08ded3d..bfda49e 100644 --- a/target/nextflow/stringtie/nextflow.config +++ b/target/nextflow/stringtie/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'stringtie' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Transcript assembly and quantification for RNA-Seq\n' } diff --git a/target/nextflow/summarizedexperiment/.config.vsh.yaml b/target/nextflow/summarizedexperiment/.config.vsh.yaml index d8714d6..ff952ca 100644 --- a/target/nextflow/summarizedexperiment/.config.vsh.yaml +++ b/target/nextflow/summarizedexperiment/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "summarizedexperiment" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -175,7 +175,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -199,10 +199,10 @@ build_info: output: "target/nextflow/summarizedexperiment" executable: "target/nextflow/summarizedexperiment/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -224,5 +224,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/summarizedexperiment/main.nf b/target/nextflow/summarizedexperiment/main.nf index 0026b1f..99cc530 100644 --- a/target/nextflow/summarizedexperiment/main.nf +++ b/target/nextflow/summarizedexperiment/main.nf @@ -1,4 +1,4 @@ -// summarizedexperiment v0.1 +// summarizedexperiment v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "summarizedexperiment", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3022,7 +3022,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3054,11 +3054,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/summarizedexperiment", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3088,7 +3088,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3513,7 +3513,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/summarizedexperiment", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/summarizedexperiment/nextflow.config b/target/nextflow/summarizedexperiment/nextflow.config index d40c95a..441d515 100644 --- a/target/nextflow/summarizedexperiment/nextflow.config +++ b/target/nextflow/summarizedexperiment/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'summarizedexperiment' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Create SummarizedExperiment object from Salmon counts' } diff --git a/target/nextflow/trimgalore/.config.vsh.yaml b/target/nextflow/trimgalore/.config.vsh.yaml index 492d393..b621ac9 100644 --- a/target/nextflow/trimgalore/.config.vsh.yaml +++ b/target/nextflow/trimgalore/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "trimgalore" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -770,7 +770,7 @@ engines: id: "docker" image: "quay.io/biocontainers/trim-galore:0.6.9--hdfd78af_0" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "docker" @@ -788,10 +788,10 @@ build_info: output: "target/nextflow/trimgalore" executable: "target/nextflow/trimgalore/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -813,5 +813,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/trimgalore/main.nf b/target/nextflow/trimgalore/main.nf index e29916d..423c8cb 100644 --- a/target/nextflow/trimgalore/main.nf +++ b/target/nextflow/trimgalore/main.nf @@ -1,4 +1,4 @@ -// trimgalore v0.1 +// trimgalore v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "trimgalore", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3554,7 +3554,7 @@ meta = [ "id" : "docker", "image" : "quay.io/biocontainers/trim-galore:0.6.9--hdfd78af_0", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3576,11 +3576,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/trimgalore", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3610,7 +3610,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -4173,7 +4173,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/trimgalore", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/trimgalore/nextflow.config b/target/nextflow/trimgalore/nextflow.config index 9aced51..55b60b2 100644 --- a/target/nextflow/trimgalore/nextflow.config +++ b/target/nextflow/trimgalore/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'trimgalore' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files. \n' } diff --git a/target/nextflow/tx2gene/.config.vsh.yaml b/target/nextflow/tx2gene/.config.vsh.yaml index 5047cb2..c18d94a 100644 --- a/target/nextflow/tx2gene/.config.vsh.yaml +++ b/target/nextflow/tx2gene/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "tx2gene" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -170,7 +170,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -192,10 +192,10 @@ build_info: output: "target/nextflow/tx2gene" executable: "target/nextflow/tx2gene/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -217,5 +217,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/tx2gene/main.nf b/target/nextflow/tx2gene/main.nf index 6cd5ce4..224f2ec 100644 --- a/target/nextflow/tx2gene/main.nf +++ b/target/nextflow/tx2gene/main.nf @@ -1,4 +1,4 @@ -// tx2gene v0.1 +// tx2gene v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "tx2gene", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3020,7 +3020,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3049,11 +3049,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/tx2gene", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3083,7 +3083,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3513,7 +3513,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/tx2gene", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/tx2gene/nextflow.config b/target/nextflow/tx2gene/nextflow.config index d7341fd..2e4fc42 100644 --- a/target/nextflow/tx2gene/nextflow.config +++ b/target/nextflow/tx2gene/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'tx2gene' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Get transcript id (tx) to gene names for tximport' } diff --git a/target/nextflow/tximport/.config.vsh.yaml b/target/nextflow/tximport/.config.vsh.yaml index a37f293..09b5f45 100644 --- a/target/nextflow/tximport/.config.vsh.yaml +++ b/target/nextflow/tximport/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "tximport" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -218,7 +218,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -247,10 +247,10 @@ build_info: output: "target/nextflow/tximport" executable: "target/nextflow/tximport/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -272,5 +272,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/tximport/main.nf b/target/nextflow/tximport/main.nf index 10f0c3d..32ab726 100644 --- a/target/nextflow/tximport/main.nf +++ b/target/nextflow/tximport/main.nf @@ -1,4 +1,4 @@ -// tximport v0.1 +// tximport v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "tximport", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3076,7 +3076,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3114,11 +3114,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/tximport", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3148,7 +3148,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3581,7 +3581,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/tximport", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/tximport/nextflow.config b/target/nextflow/tximport/nextflow.config index e106d17..13be46b 100644 --- a/target/nextflow/tximport/nextflow.config +++ b/target/nextflow/tximport/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'tximport' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Get dataframe linking transcript ID, gene ID, and gene name' } diff --git a/target/nextflow/ucsc/bedclip/.config.vsh.yaml b/target/nextflow/ucsc/bedclip/.config.vsh.yaml index 89de5f9..4f55293 100644 --- a/target/nextflow/ucsc/bedclip/.config.vsh.yaml +++ b/target/nextflow/ucsc/bedclip/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "bedclip" namespace: "ucsc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -141,7 +141,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -164,10 +164,10 @@ build_info: output: "target/nextflow/ucsc/bedclip" executable: "target/nextflow/ucsc/bedclip/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -189,5 +189,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/ucsc/bedclip/main.nf b/target/nextflow/ucsc/bedclip/main.nf index 0274e10..db82ecc 100644 --- a/target/nextflow/ucsc/bedclip/main.nf +++ b/target/nextflow/ucsc/bedclip/main.nf @@ -1,4 +1,4 @@ -// bedclip v0.1 +// bedclip v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "bedclip", "namespace" : "ucsc", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2988,7 +2988,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3018,11 +3018,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/ucsc/bedclip", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3052,7 +3052,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3459,7 +3459,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/ucsc/bedclip", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/ucsc/bedclip/nextflow.config b/target/nextflow/ucsc/bedclip/nextflow.config index 476b399..73d0a6d 100644 --- a/target/nextflow/ucsc/bedclip/nextflow.config +++ b/target/nextflow/ucsc/bedclip/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'ucsc/bedclip' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Remove lines from bed file that refer to off-chromosome locations' } diff --git a/target/nextflow/ucsc/bedgraphtobigwig/.config.vsh.yaml b/target/nextflow/ucsc/bedgraphtobigwig/.config.vsh.yaml index 5cf3581..320319b 100644 --- a/target/nextflow/ucsc/bedgraphtobigwig/.config.vsh.yaml +++ b/target/nextflow/ucsc/bedgraphtobigwig/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "bedgraphtobigwig" namespace: "ucsc" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -141,7 +141,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -164,10 +164,10 @@ build_info: output: "target/nextflow/ucsc/bedgraphtobigwig" executable: "target/nextflow/ucsc/bedgraphtobigwig/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -189,5 +189,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/ucsc/bedgraphtobigwig/main.nf b/target/nextflow/ucsc/bedgraphtobigwig/main.nf index 4837579..871851c 100644 --- a/target/nextflow/ucsc/bedgraphtobigwig/main.nf +++ b/target/nextflow/ucsc/bedgraphtobigwig/main.nf @@ -1,4 +1,4 @@ -// bedgraphtobigwig v0.1 +// bedgraphtobigwig v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "bedgraphtobigwig", "namespace" : "ucsc", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2988,7 +2988,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3018,11 +3018,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/ucsc/bedgraphtobigwig", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3052,7 +3052,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3459,7 +3459,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/ucsc/bedgraphtobigwig", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/ucsc/bedgraphtobigwig/nextflow.config b/target/nextflow/ucsc/bedgraphtobigwig/nextflow.config index 3bb2e01..0334457 100644 --- a/target/nextflow/ucsc/bedgraphtobigwig/nextflow.config +++ b/target/nextflow/ucsc/bedgraphtobigwig/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'ucsc/bedgraphtobigwig' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Convert a bedGraph file to bigWig format' } diff --git a/target/nextflow/umitools/umitools_dedup/.config.vsh.yaml b/target/nextflow/umitools/umitools_dedup/.config.vsh.yaml index 783b5db..8b50cc7 100644 --- a/target/nextflow/umitools/umitools_dedup/.config.vsh.yaml +++ b/target/nextflow/umitools/umitools_dedup/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "umitools_dedup" namespace: "umitools" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -172,7 +172,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -195,10 +195,10 @@ build_info: output: "target/nextflow/umitools/umitools_dedup" executable: "target/nextflow/umitools/umitools_dedup/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -220,5 +220,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/umitools/umitools_dedup/main.nf b/target/nextflow/umitools/umitools_dedup/main.nf index 9fad170..1c4e63b 100644 --- a/target/nextflow/umitools/umitools_dedup/main.nf +++ b/target/nextflow/umitools/umitools_dedup/main.nf @@ -1,4 +1,4 @@ -// umitools_dedup v0.1 +// umitools_dedup v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "umitools_dedup", "namespace" : "umitools", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3023,7 +3023,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3054,11 +3054,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/umitools/umitools_dedup", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3088,7 +3088,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3514,7 +3514,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/umitools/umitools_dedup", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/umitools/umitools_dedup/nextflow.config b/target/nextflow/umitools/umitools_dedup/nextflow.config index ee6d506..1c9b7ee 100644 --- a/target/nextflow/umitools/umitools_dedup/nextflow.config +++ b/target/nextflow/umitools/umitools_dedup/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'umitools/umitools_dedup' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Deduplicate reads based on the mapping co-ordinate and the UMI attached to the read.\n' } diff --git a/target/nextflow/umitools/umitools_extract/.config.vsh.yaml b/target/nextflow/umitools/umitools_extract/.config.vsh.yaml index f0b321a..435c322 100644 --- a/target/nextflow/umitools/umitools_extract/.config.vsh.yaml +++ b/target/nextflow/umitools/umitools_extract/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "umitools_extract" namespace: "umitools" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -230,7 +230,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -253,10 +253,10 @@ build_info: output: "target/nextflow/umitools/umitools_extract" executable: "target/nextflow/umitools/umitools_extract/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -278,5 +278,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/umitools/umitools_extract/main.nf b/target/nextflow/umitools/umitools_extract/main.nf index 0a2f522..dae9481 100644 --- a/target/nextflow/umitools/umitools_extract/main.nf +++ b/target/nextflow/umitools/umitools_extract/main.nf @@ -1,4 +1,4 @@ -// umitools_extract v0.1 +// umitools_extract v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "umitools_extract", "namespace" : "umitools", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3088,7 +3088,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3119,11 +3119,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/umitools/umitools_extract", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3153,7 +3153,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3620,7 +3620,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/umitools/umitools_extract", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/umitools/umitools_extract/nextflow.config b/target/nextflow/umitools/umitools_extract/nextflow.config index 879d012..766650a 100644 --- a/target/nextflow/umitools/umitools_extract/nextflow.config +++ b/target/nextflow/umitools/umitools_extract/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'umitools/umitools_extract' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'UMI-tools contains tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs) and single cell RNA-Seq cell barcodes. See https://umi-tools.readthedocs.io/en/latest/ for more information.\nThis component flexible removes UMI sequences from fastq reads. UMIs are removed and appended to the read name.\nThis component extracts UMI barcode from a read and add it to the read name, leaving any sample barcode in place\n' } diff --git a/target/nextflow/umitools_prepareforquant/.config.vsh.yaml b/target/nextflow/umitools_prepareforquant/.config.vsh.yaml index 8b82009..4edf9ae 100644 --- a/target/nextflow/umitools_prepareforquant/.config.vsh.yaml +++ b/target/nextflow/umitools_prepareforquant/.config.vsh.yaml @@ -1,5 +1,5 @@ name: "umitools_prepareforquant" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -132,7 +132,7 @@ engines: id: "docker" image: "ubuntu:22.04" target_registry: "images.viash-hub.com" - target_tag: "v0.1" + target_tag: "v0.1.0" namespace_separator: "/" setup: - type: "apt" @@ -156,10 +156,10 @@ build_info: output: "target/nextflow/umitools_prepareforquant" executable: "target/nextflow/umitools_prepareforquant/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -181,5 +181,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/umitools_prepareforquant/main.nf b/target/nextflow/umitools_prepareforquant/main.nf index 79b3c11..0b4a1de 100644 --- a/target/nextflow/umitools_prepareforquant/main.nf +++ b/target/nextflow/umitools_prepareforquant/main.nf @@ -1,4 +1,4 @@ -// umitools_prepareforquant v0.1 +// umitools_prepareforquant v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2805,7 +2805,7 @@ meta = [ "resources_dir": moduleDir.toRealPath().normalize(), "config": processConfig(readJsonBlob('''{ "name" : "umitools_prepareforquant", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -2975,7 +2975,7 @@ meta = [ "id" : "docker", "image" : "ubuntu:22.04", "target_registry" : "images.viash-hub.com", - "target_tag" : "v0.1", + "target_tag" : "v0.1.0", "namespace_separator" : "/", "setup" : [ { @@ -3007,11 +3007,11 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/umitools_prepareforquant", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3041,7 +3041,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } @@ -3451,7 +3451,7 @@ meta["defaults"] = [ "container" : { "registry" : "images.viash-hub.com", "image" : "vsh/umitools_prepareforquant", - "tag" : "v0.1" + "tag" : "v0.1.0" }, "tag" : "$id" }'''), diff --git a/target/nextflow/umitools_prepareforquant/nextflow.config b/target/nextflow/umitools_prepareforquant/nextflow.config index 790fcc0..c78f35f 100644 --- a/target/nextflow/umitools_prepareforquant/nextflow.config +++ b/target/nextflow/umitools_prepareforquant/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'umitools_prepareforquant' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'Fix paired-end reads in name sorted BAM file to prepare for salmon quantification' } diff --git a/target/nextflow/workflows/genome_alignment_and_quant/.config.vsh.yaml b/target/nextflow/workflows/genome_alignment_and_quant/.config.vsh.yaml index 35999dd..70cdec6 100644 --- a/target/nextflow/workflows/genome_alignment_and_quant/.config.vsh.yaml +++ b/target/nextflow/workflows/genome_alignment_and_quant/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "genome_alignment_and_quant" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -603,8 +603,8 @@ build_info: output: "target/nextflow/workflows/genome_alignment_and_quant" executable: "target/nextflow/workflows/genome_alignment_and_quant/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/star/star_align_reads" - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/samtools/samtools_sort" @@ -617,7 +617,7 @@ build_info: - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/salmon/salmon_quant" - "target/nextflow/rsem/rsem_calculate_expression" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -639,5 +639,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/workflows/genome_alignment_and_quant/main.nf b/target/nextflow/workflows/genome_alignment_and_quant/main.nf index fc58607..727a44e 100644 --- a/target/nextflow/workflows/genome_alignment_and_quant/main.nf +++ b/target/nextflow/workflows/genome_alignment_and_quant/main.nf @@ -1,4 +1,4 @@ -// genome_alignment_and_quant v0.1 +// genome_alignment_and_quant v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "genome_alignment_and_quant", "namespace" : "workflows", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3531,11 +3531,11 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/genome_alignment_and_quant", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3565,7 +3565,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } diff --git a/target/nextflow/workflows/genome_alignment_and_quant/nextflow.config b/target/nextflow/workflows/genome_alignment_and_quant/nextflow.config index 6be1b02..4a0eb9c 100644 --- a/target/nextflow/workflows/genome_alignment_and_quant/nextflow.config +++ b/target/nextflow/workflows/genome_alignment_and_quant/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'workflows/genome_alignment_and_quant' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'A viash sub-workflow for genome alignment and quantification stage of nf-core/rnaseq pipeline.\n' } diff --git a/target/nextflow/workflows/merge_quant_results/.config.vsh.yaml b/target/nextflow/workflows/merge_quant_results/.config.vsh.yaml index 1423092..e5bb889 100644 --- a/target/nextflow/workflows/merge_quant_results/.config.vsh.yaml +++ b/target/nextflow/workflows/merge_quant_results/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "merge_quant_results" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -278,14 +278,14 @@ build_info: output: "target/nextflow/workflows/merge_quant_results" executable: "target/nextflow/workflows/merge_quant_results/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/nextflow/tx2gene" - "target/nextflow/tximport" - "target/nextflow/summarizedexperiment" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -307,5 +307,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/workflows/merge_quant_results/main.nf b/target/nextflow/workflows/merge_quant_results/main.nf index adf51ff..f65ed33 100644 --- a/target/nextflow/workflows/merge_quant_results/main.nf +++ b/target/nextflow/workflows/merge_quant_results/main.nf @@ -1,4 +1,4 @@ -// merge_quant_results v0.1 +// merge_quant_results v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "merge_quant_results", "namespace" : "workflows", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3149,11 +3149,11 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/merge_quant_results", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3183,7 +3183,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } diff --git a/target/nextflow/workflows/merge_quant_results/nextflow.config b/target/nextflow/workflows/merge_quant_results/nextflow.config index 5a90112..b85b790 100644 --- a/target/nextflow/workflows/merge_quant_results/nextflow.config +++ b/target/nextflow/workflows/merge_quant_results/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'workflows/merge_quant_results' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'A sub-workflow to merge the counts obtained from salmon quant across all samples.' } diff --git a/target/nextflow/workflows/post_processing/.config.vsh.yaml b/target/nextflow/workflows/post_processing/.config.vsh.yaml index dbf208d..62452d9 100644 --- a/target/nextflow/workflows/post_processing/.config.vsh.yaml +++ b/target/nextflow/workflows/post_processing/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "post_processing" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -486,8 +486,8 @@ build_info: output: "target/nextflow/workflows/post_processing" executable: "target/nextflow/workflows/post_processing/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/nextflow/picard_markduplicates" - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/samtools/samtools_sort" @@ -500,7 +500,7 @@ build_info: - "target/nextflow/ucsc/bedclip" - "target/nextflow/ucsc/bedgraphtobigwig" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -522,5 +522,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/workflows/post_processing/main.nf b/target/nextflow/workflows/post_processing/main.nf index 91cb967..fb77fcd 100644 --- a/target/nextflow/workflows/post_processing/main.nf +++ b/target/nextflow/workflows/post_processing/main.nf @@ -1,4 +1,4 @@ -// post_processing v0.1 +// post_processing v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "post_processing", "namespace" : "workflows", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3397,11 +3397,11 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/post_processing", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3431,7 +3431,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } diff --git a/target/nextflow/workflows/post_processing/nextflow.config b/target/nextflow/workflows/post_processing/nextflow.config index 43dd7c0..776a891 100644 --- a/target/nextflow/workflows/post_processing/nextflow.config +++ b/target/nextflow/workflows/post_processing/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'workflows/post_processing' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'A viash sub-workflow for the post-processing stage of nf-core/rnaseq pipeline.\n' } diff --git a/target/nextflow/workflows/pre_processing/.config.vsh.yaml b/target/nextflow/workflows/pre_processing/.config.vsh.yaml index 93a78cd..be70d37 100644 --- a/target/nextflow/workflows/pre_processing/.config.vsh.yaml +++ b/target/nextflow/workflows/pre_processing/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "pre_processing" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Inputs" arguments: @@ -673,8 +673,8 @@ build_info: output: "target/nextflow/workflows/pre_processing" executable: "target/nextflow/workflows/pre_processing/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/nextflow/fastqc" - "target/nextflow/umitools/umitools_extract" @@ -686,7 +686,7 @@ build_info: - "target/nextflow/fq_subsample" - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/salmon/salmon_quant" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -708,5 +708,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/workflows/pre_processing/main.nf b/target/nextflow/workflows/pre_processing/main.nf index 7de50c2..a651615 100644 --- a/target/nextflow/workflows/pre_processing/main.nf +++ b/target/nextflow/workflows/pre_processing/main.nf @@ -1,4 +1,4 @@ -// pre_processing v0.1 +// pre_processing v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "pre_processing", "namespace" : "workflows", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Inputs", @@ -3626,11 +3626,11 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/pre_processing", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3660,7 +3660,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } diff --git a/target/nextflow/workflows/pre_processing/nextflow.config b/target/nextflow/workflows/pre_processing/nextflow.config index 860da26..177ded8 100644 --- a/target/nextflow/workflows/pre_processing/nextflow.config +++ b/target/nextflow/workflows/pre_processing/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'workflows/pre_processing' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'A subworkflow for the pre-processing stage of the nf-core/rnaseq pipeline.\n' } diff --git a/target/nextflow/workflows/prepare_genome/.config.vsh.yaml b/target/nextflow/workflows/prepare_genome/.config.vsh.yaml index f79b2e7..40b4872 100644 --- a/target/nextflow/workflows/prepare_genome/.config.vsh.yaml +++ b/target/nextflow/workflows/prepare_genome/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "prepare_genome" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -496,8 +496,8 @@ build_info: output: "target/nextflow/workflows/prepare_genome" executable: "target/nextflow/workflows/prepare_genome/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/nextflow/gunzip" - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/gffread" @@ -513,7 +513,7 @@ build_info: - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/salmon/salmon_index" - "target/nextflow/kallisto/kallisto_index" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -535,5 +535,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/workflows/prepare_genome/main.nf b/target/nextflow/workflows/prepare_genome/main.nf index e3cc5e7..80fa34a 100644 --- a/target/nextflow/workflows/prepare_genome/main.nf +++ b/target/nextflow/workflows/prepare_genome/main.nf @@ -1,4 +1,4 @@ -// prepare_genome v0.1 +// prepare_genome v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "prepare_genome", "namespace" : "workflows", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3407,11 +3407,11 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/prepare_genome", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3441,7 +3441,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } diff --git a/target/nextflow/workflows/prepare_genome/nextflow.config b/target/nextflow/workflows/prepare_genome/nextflow.config index 213c364..056965b 100644 --- a/target/nextflow/workflows/prepare_genome/nextflow.config +++ b/target/nextflow/workflows/prepare_genome/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'workflows/prepare_genome' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'A subworkflow for preparing all the required genome references\n' } diff --git a/target/nextflow/workflows/pseudo_alignment_and_quant/.config.vsh.yaml b/target/nextflow/workflows/pseudo_alignment_and_quant/.config.vsh.yaml index 53620fb..433b60f 100644 --- a/target/nextflow/workflows/pseudo_alignment_and_quant/.config.vsh.yaml +++ b/target/nextflow/workflows/pseudo_alignment_and_quant/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "pseudo_alignment_and_quant" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -283,13 +283,13 @@ build_info: output: "target/nextflow/workflows/pseudo_alignment_and_quant" executable: "target/nextflow/workflows/pseudo_alignment_and_quant/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/salmon/salmon_quant" - "target/nextflow/kallisto/kallisto_quant" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -311,5 +311,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/workflows/pseudo_alignment_and_quant/main.nf b/target/nextflow/workflows/pseudo_alignment_and_quant/main.nf index daee0b7..b0f9868 100644 --- a/target/nextflow/workflows/pseudo_alignment_and_quant/main.nf +++ b/target/nextflow/workflows/pseudo_alignment_and_quant/main.nf @@ -1,4 +1,4 @@ -// pseudo_alignment_and_quant v0.1 +// pseudo_alignment_and_quant v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "pseudo_alignment_and_quant", "namespace" : "workflows", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -3143,11 +3143,11 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/pseudo_alignment_and_quant", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -3177,7 +3177,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } diff --git a/target/nextflow/workflows/pseudo_alignment_and_quant/nextflow.config b/target/nextflow/workflows/pseudo_alignment_and_quant/nextflow.config index 21f48b9..3023ed0 100644 --- a/target/nextflow/workflows/pseudo_alignment_and_quant/nextflow.config +++ b/target/nextflow/workflows/pseudo_alignment_and_quant/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'workflows/pseudo_alignment_and_quant' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'A viash sub-workflow for pseudo alignment and quantification stage of nf-core/rnaseq pipeline.\n' } diff --git a/target/nextflow/workflows/quality_control/.config.vsh.yaml b/target/nextflow/workflows/quality_control/.config.vsh.yaml index 30dc6ee..6db3b15 100644 --- a/target/nextflow/workflows/quality_control/.config.vsh.yaml +++ b/target/nextflow/workflows/quality_control/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "quality_control" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -1596,8 +1596,8 @@ build_info: output: "target/nextflow/workflows/quality_control" executable: "target/nextflow/workflows/quality_control/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/nextflow/rseqc/rseqc_bamstat" - "target/nextflow/rseqc/rseqc_inferexperiment" @@ -1618,7 +1618,7 @@ build_info: - "target/nextflow/rsem/rsem_merge_counts" - "target/nextflow/workflows/merge_quant_results" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -1640,5 +1640,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/workflows/quality_control/main.nf b/target/nextflow/workflows/quality_control/main.nf index 49abf20..be6de30 100644 --- a/target/nextflow/workflows/quality_control/main.nf +++ b/target/nextflow/workflows/quality_control/main.nf @@ -1,4 +1,4 @@ -// quality_control v0.1 +// quality_control v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "quality_control", "namespace" : "workflows", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -4676,11 +4676,11 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/quality_control", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -4710,7 +4710,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } diff --git a/target/nextflow/workflows/quality_control/nextflow.config b/target/nextflow/workflows/quality_control/nextflow.config index ed0df04..c0ed49d 100644 --- a/target/nextflow/workflows/quality_control/nextflow.config +++ b/target/nextflow/workflows/quality_control/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'workflows/quality_control' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'A subworkflow for the final quality control stage of the nf-core/rnaseq pipeline.\n' } diff --git a/target/nextflow/workflows/rnaseq/.config.vsh.yaml b/target/nextflow/workflows/rnaseq/.config.vsh.yaml index 1dcfefa..29f3f1a 100644 --- a/target/nextflow/workflows/rnaseq/.config.vsh.yaml +++ b/target/nextflow/workflows/rnaseq/.config.vsh.yaml @@ -1,6 +1,6 @@ name: "rnaseq" namespace: "workflows" -version: "v0.1" +version: "v0.1.0" argument_groups: - name: "Input" arguments: @@ -2117,8 +2117,8 @@ build_info: output: "target/nextflow/workflows/rnaseq" executable: "target/nextflow/workflows/rnaseq/main.nf" viash_version: "0.9.0" - git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b" - git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa" + git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" dependencies: - "target/nextflow/workflows/prepare_genome" - "target/nextflow/cat_fastq" @@ -2128,7 +2128,7 @@ build_info: - "target/nextflow/workflows/post_processing" - "target/nextflow/workflows/quality_control" package_config: - version: "v0.1" + version: "v0.1.0" info: test_resources: - path: "gs://viash-hub-test-data/rnaseq/v1" @@ -2150,5 +2150,5 @@ package_config: \ := '$id'\n" - ".engines += { type: \"native\" }" - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'" - - ".engines[.type == 'docker'].target_tag := 'v0.1'" + - ".engines[.type == 'docker'].target_tag := 'v0.1.0'" organization: "vsh" diff --git a/target/nextflow/workflows/rnaseq/main.nf b/target/nextflow/workflows/rnaseq/main.nf index 08244cb..ad3a5e2 100644 --- a/target/nextflow/workflows/rnaseq/main.nf +++ b/target/nextflow/workflows/rnaseq/main.nf @@ -1,4 +1,4 @@ -// rnaseq v0.1 +// rnaseq v0.1.0 // // This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data @@ -2806,7 +2806,7 @@ meta = [ "config": processConfig(readJsonBlob('''{ "name" : "rnaseq", "namespace" : "workflows", - "version" : "v0.1", + "version" : "v0.1.0", "argument_groups" : [ { "name" : "Input", @@ -4891,7 +4891,7 @@ meta = [ "name" : "--dupradar_output_duprate_exp_boxplot", "description" : "path to output file (pdf) of distribution of expression box plot", "default" : [ - ''' + ''' "dupradar/box_plot/$id.duprate_exp_boxplot.pdf" +''' + ''' "dupradar/box_plot/$id.duprate_exp_boxplot.pdf" ], "must_exist" : true, "create_parent" : true, @@ -5283,11 +5283,11 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/rnaseq", "viash_version" : "0.9.0", - "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b", - "git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq" + "git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa", + "git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq" }, "package_config" : { - "version" : "v0.1", + "version" : "v0.1.0", "info" : { "test_resources" : [ { @@ -5317,7 +5317,7 @@ meta = [ ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n", ".engines += { type: \\"native\\" }", ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'", - ".engines[.type == 'docker'].target_tag := 'v0.1'" + ".engines[.type == 'docker'].target_tag := 'v0.1.0'" ], "organization" : "vsh" } diff --git a/target/nextflow/workflows/rnaseq/nextflow.config b/target/nextflow/workflows/rnaseq/nextflow.config index 342aa3c..d38e8fe 100644 --- a/target/nextflow/workflows/rnaseq/nextflow.config +++ b/target/nextflow/workflows/rnaseq/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'workflows/rnaseq' mainScript = 'main.nf' nextflowVersion = '!>=20.12.1-edge' - version = 'v0.1' + version = 'v0.1.0' description = 'A viash workflow for the nf-core/rnaseq pipeline.\n' }