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Build branch main with version main (cb9b328)

Browse Source 
Build pipeline: viash-hub.rnaseq.main-mf5kg

Source commit: cb9b328834

Source message: Update pointers to biobox and craftbox
This commit is contained in:
CI
2024-09-13 11:32:59 +00:00
parent 1ebb61f1e8
commit 92b5a42360
284 changed files with 1310 additions and 29225 deletions
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12
target/executable/workflows/pre_processing/.config.vsh.yaml
View File

@@ -551,7 +551,7 @@ dependencies:
repository:
type: "vsh"
repo: "vsh/biobox"
tag: "v0.1"
tag: "v0.2.0"
- name: "fq_subsample"
repository:
type: "local"
@@ -559,12 +559,12 @@ dependencies:
repository:
type: "vsh"
repo: "vsh/biobox"
tag: "v0.1"
tag: "v0.2.0"
repositories:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.1"
tag: "v0.2.0"
runners:
- type: "executable"
id: "executable"
@@ -640,7 +640,7 @@ build_info:
output: "target/executable/workflows/pre_processing"
executable: "target/executable/workflows/pre_processing/pre_processing"
viash_version: "0.9.0"
git_commit: "1e1ffb315fefec05db2ee0c62e1c98ce4b49929c"
git_commit: "cb9b32883494c48f394213551a82e9103f2e620c"
git_remote: "https://github.com/viash-hub/rnaseq"
dependencies:
- "target/nextflow/fastqc"
@@ -648,9 +648,9 @@ build_info:
- "target/nextflow/trimgalore"
- "target/nextflow/bbmap_bbsplit"
- "target/nextflow/sortmerna"
- "target/dependencies/vsh/vsh/biobox/v0.1/nextflow/fastp"
- "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/fastp"
- "target/nextflow/fq_subsample"
- "target/dependencies/vsh/vsh/biobox/v0.1/nextflow/salmon/salmon_quant"
- "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/salmon/salmon_quant"
package_config:
version: "main"
info:

4
target/executable/workflows/pre_processing/pre_processing
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@@ -1462,8 +1462,8 @@ VIASH_DEP_TRIMGALORE="$VIASH_META_RESOURCES_DIR/../../../nextflow/trimgalore/mai
VIASH_DEP_BBMAP_BBSPLIT="$VIASH_META_RESOURCES_DIR/../../../nextflow/bbmap_bbsplit/main.nf"
VIASH_DEP_SORTMERNA="$VIASH_META_RESOURCES_DIR/../../../nextflow/sortmerna/main.nf"
VIASH_DEP_FQ_SUBSAMPLE="$VIASH_META_RESOURCES_DIR/../../../nextflow/fq_subsample/main.nf"
VIASH_DEP_FASTP="$VIASH_TARGET_DIR/dependencies/vsh/vsh/biobox/v0.1/nextflow/fastp/main.nf"
VIASH_DEP_SALMON_SALMON_QUANT="$VIASH_TARGET_DIR/dependencies/vsh/vsh/biobox/v0.1/nextflow/salmon/salmon_quant/main.nf"
VIASH_DEP_FASTP="$VIASH_TARGET_DIR/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/fastp/main.nf"
VIASH_DEP_SALMON_SALMON_QUANT="$VIASH_TARGET_DIR/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/salmon/salmon_quant/main.nf"
ViashDebug "Running command: $(echo $VIASH_CMD)"
cat << VIASHEOF | eval $VIASH_CMD