Build branch main with version main (cb9b328)

Build pipeline: viash-hub.rnaseq.main-mf5kg

Source commit: cb9b328834

Source message: Update pointers to biobox and craftbox
This commit is contained in:
CI
2024-09-13 11:32:59 +00:00
parent 1ebb61f1e8
commit 92b5a42360
284 changed files with 1310 additions and 29225 deletions

View File

@@ -1490,7 +1490,7 @@ dependencies:
repository:
type: "vsh"
repo: "vsh/biobox"
tag: "v0.1"
tag: "v0.2.0"
- name: "multiqc_custom_biotype"
repository:
type: "local"
@@ -1504,7 +1504,7 @@ dependencies:
repository:
type: "vsh"
repo: "vsh/biobox"
tag: "v0.1"
tag: "v0.2.0"
- name: "workflows/merge_quant_results"
repository:
type: "local"
@@ -1512,7 +1512,7 @@ repositories:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.1"
tag: "v0.2.0"
runners:
- type: "executable"
id: "executable"
@@ -1588,7 +1588,7 @@ build_info:
output: "target/executable/workflows/quality_control"
executable: "target/executable/workflows/quality_control/quality_control"
viash_version: "0.9.0"
git_commit: "1e1ffb315fefec05db2ee0c62e1c98ce4b49929c"
git_commit: "cb9b32883494c48f394213551a82e9103f2e620c"
git_remote: "https://github.com/viash-hub/rnaseq"
dependencies:
- "target/nextflow/rseqc/rseqc_bamstat"
@@ -1602,11 +1602,11 @@ build_info:
- "target/nextflow/dupradar"
- "target/nextflow/qualimap"
- "target/nextflow/preseq_lcextrap"
- "target/dependencies/vsh/vsh/biobox/v0.1/nextflow/featurecounts"
- "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/featurecounts"
- "target/nextflow/multiqc_custom_biotype"
- "target/nextflow/deseq2_qc"
- "target/nextflow/prepare_multiqc_input"
- "target/dependencies/vsh/vsh/biobox/v0.1/nextflow/multiqc"
- "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/multiqc"
- "target/nextflow/workflows/merge_quant_results"
package_config:
version: "main"

View File

@@ -3343,8 +3343,8 @@ VIASH_DEP_MULTIQC_CUSTOM_BIOTYPE="$VIASH_META_RESOURCES_DIR/../../../nextflow/mu
VIASH_DEP_DESEQ2_QC="$VIASH_META_RESOURCES_DIR/../../../nextflow/deseq2_qc/main.nf"
VIASH_DEP_PREPARE_MULTIQC_INPUT="$VIASH_META_RESOURCES_DIR/../../../nextflow/prepare_multiqc_input/main.nf"
VIASH_DEP_WORKFLOWS_MERGE_QUANT_RESULTS="$VIASH_META_RESOURCES_DIR/../../../nextflow/workflows/merge_quant_results/main.nf"
VIASH_DEP_FEATURECOUNTS="$VIASH_TARGET_DIR/dependencies/vsh/vsh/biobox/v0.1/nextflow/featurecounts/main.nf"
VIASH_DEP_MULTIQC="$VIASH_TARGET_DIR/dependencies/vsh/vsh/biobox/v0.1/nextflow/multiqc/main.nf"
VIASH_DEP_FEATURECOUNTS="$VIASH_TARGET_DIR/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/featurecounts/main.nf"
VIASH_DEP_MULTIQC="$VIASH_TARGET_DIR/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/multiqc/main.nf"
ViashDebug "Running command: $(echo $VIASH_CMD)"
cat << VIASHEOF | eval $VIASH_CMD