Build branch main with version main (cb9b328)
Build pipeline: viash-hub.rnaseq.main-mf5kg
Source commit: cb9b328834
Source message: Update pointers to biobox and craftbox
This commit is contained in:
@@ -1490,7 +1490,7 @@ dependencies:
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repository:
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type: "vsh"
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repo: "vsh/biobox"
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tag: "v0.1"
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tag: "v0.2.0"
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- name: "multiqc_custom_biotype"
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repository:
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type: "local"
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@@ -1504,7 +1504,7 @@ dependencies:
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repository:
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type: "vsh"
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repo: "vsh/biobox"
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tag: "v0.1"
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tag: "v0.2.0"
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- name: "workflows/merge_quant_results"
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repository:
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type: "local"
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@@ -1512,7 +1512,7 @@ repositories:
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- type: "vsh"
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name: "biobox"
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repo: "vsh/biobox"
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tag: "v0.1"
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tag: "v0.2.0"
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runners:
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- type: "executable"
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id: "executable"
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@@ -1588,7 +1588,7 @@ build_info:
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output: "target/executable/workflows/quality_control"
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executable: "target/executable/workflows/quality_control/quality_control"
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viash_version: "0.9.0"
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git_commit: "1e1ffb315fefec05db2ee0c62e1c98ce4b49929c"
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git_commit: "cb9b32883494c48f394213551a82e9103f2e620c"
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git_remote: "https://github.com/viash-hub/rnaseq"
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dependencies:
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- "target/nextflow/rseqc/rseqc_bamstat"
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@@ -1602,11 +1602,11 @@ build_info:
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- "target/nextflow/dupradar"
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- "target/nextflow/qualimap"
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- "target/nextflow/preseq_lcextrap"
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- "target/dependencies/vsh/vsh/biobox/v0.1/nextflow/featurecounts"
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- "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/featurecounts"
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- "target/nextflow/multiqc_custom_biotype"
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- "target/nextflow/deseq2_qc"
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- "target/nextflow/prepare_multiqc_input"
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- "target/dependencies/vsh/vsh/biobox/v0.1/nextflow/multiqc"
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- "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/multiqc"
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- "target/nextflow/workflows/merge_quant_results"
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package_config:
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version: "main"
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@@ -3343,8 +3343,8 @@ VIASH_DEP_MULTIQC_CUSTOM_BIOTYPE="$VIASH_META_RESOURCES_DIR/../../../nextflow/mu
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VIASH_DEP_DESEQ2_QC="$VIASH_META_RESOURCES_DIR/../../../nextflow/deseq2_qc/main.nf"
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VIASH_DEP_PREPARE_MULTIQC_INPUT="$VIASH_META_RESOURCES_DIR/../../../nextflow/prepare_multiqc_input/main.nf"
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VIASH_DEP_WORKFLOWS_MERGE_QUANT_RESULTS="$VIASH_META_RESOURCES_DIR/../../../nextflow/workflows/merge_quant_results/main.nf"
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VIASH_DEP_FEATURECOUNTS="$VIASH_TARGET_DIR/dependencies/vsh/vsh/biobox/v0.1/nextflow/featurecounts/main.nf"
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VIASH_DEP_MULTIQC="$VIASH_TARGET_DIR/dependencies/vsh/vsh/biobox/v0.1/nextflow/multiqc/main.nf"
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VIASH_DEP_FEATURECOUNTS="$VIASH_TARGET_DIR/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/featurecounts/main.nf"
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VIASH_DEP_MULTIQC="$VIASH_TARGET_DIR/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/multiqc/main.nf"
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ViashDebug "Running command: $(echo $VIASH_CMD)"
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cat << VIASHEOF | eval $VIASH_CMD
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