Build branch main with version main (2b3d511)

Build pipeline: viash-hub.rnaseq.main-8jfv9

Source commit: 2b3d511b34

Source message: Add CHANGELOG

CHANGELOG.md

@@ -0,0 +1,13 @@
+# RNAseq version x.y.z
+
+## Changes
+
+- Add resources labels
+- Increase the number of components that are fetched from BioBox
+
+## Known issues
+
+The following caveats are known and will be addressed in future releases:
+
+- [`bbmap_bbsplit` input file logic requires revision](https://github.com/viash-hub/rnaseq/issues/30)
+- [Setting `--skip_deseq2_qc=false` results in an error](https://github.com/viash-hub/rnaseq/issues/31)

target/executable/bedtools_genomecov/.config.vsh.yaml

@@ -183,8 +183,8 @@ build_info:
   output: "target/executable/bedtools_genomecov"
   executable: "target/executable/bedtools_genomecov/bedtools_genomecov"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/bedtools_genomecov/bedtools_genomecov

@@ -481,9 +481,9 @@ mv bedtools.static /usr/local/bin/bedtools && \
 chmod a+x /usr/local/bin/bedtools
 
 LABEL org.opencontainers.image.description="Companion container for running component bedtools_genomecov"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:23Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:12Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/cat_additional_fasta/.config.vsh.yaml

@@ -187,8 +187,8 @@ build_info:
   output: "target/executable/cat_additional_fasta"
   executable: "target/executable/cat_additional_fasta/cat_additional_fasta"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/cat_additional_fasta/cat_additional_fasta

@@ -480,9 +480,9 @@ function ViashDockerfile {
 FROM python:latest
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component cat_additional_fasta"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:22Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:11Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/cat_fastq/.config.vsh.yaml

@@ -174,8 +174,8 @@ build_info:
   output: "target/executable/cat_fastq"
   executable: "target/executable/cat_fastq/cat_fastq"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/cat_fastq/cat_fastq

@@ -472,9 +472,9 @@ function ViashDockerfile {
 FROM ubuntu:22.04
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component cat_fastq"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:22Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:10Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/deseq2_qc/.config.vsh.yaml

@@ -242,8 +242,8 @@ build_info:
   output: "target/executable/deseq2_qc"
   executable: "target/executable/deseq2_qc/deseq2_qc"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/deseq2_qc/deseq2_qc

@@ -506,9 +506,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
   Rscript -e 'remotes::install_cran(c("optparse", "ggplot2", "RColorBrewer", "pheatmap", "stringr", "matrixStats"), repos = "https://cran.rstudio.com")'
 
 LABEL org.opencontainers.image.description="Companion container for running component deseq2_qc"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:22Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:10Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/dupradar/.config.vsh.yaml

@@ -271,8 +271,8 @@ build_info:
   output: "target/executable/dupradar"
   executable: "target/executable/dupradar/dupradar"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/dupradar/dupradar

@@ -520,9 +520,9 @@ RUN Rscript -e 'if (!requireNamespace("BiocManager", quietly = TRUE)) install.pa
   Rscript -e 'if (!requireNamespace("dupRadar", quietly = TRUE)) BiocManager::install("dupRadar")'
 
 LABEL org.opencontainers.image.description="Companion container for running component dupradar"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:24Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:12Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/getchromsizes/.config.vsh.yaml

@@ -172,8 +172,8 @@ build_info:
   output: "target/executable/getchromsizes"
   executable: "target/executable/getchromsizes/getchromsizes"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/getchromsizes/getchromsizes

@@ -480,9 +480,9 @@ make && \
 make install
 
 LABEL org.opencontainers.image.description="Companion container for running component getchromsizes"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:23Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:11Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/gtf2bed/.config.vsh.yaml

@@ -150,8 +150,8 @@ build_info:
   output: "target/executable/gtf2bed"
   executable: "target/executable/gtf2bed/gtf2bed"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/gtf2bed/gtf2bed

@@ -466,9 +466,9 @@ RUN apt-get update && \
   rm -rf /var/lib/apt/lists/*
 
 LABEL org.opencontainers.image.description="Companion container for running component gtf2bed"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:24Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:13Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/gtf_filter/.config.vsh.yaml

@@ -160,8 +160,8 @@ build_info:
   output: "target/executable/gtf_filter"
   executable: "target/executable/gtf_filter/gtf_filter"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/gtf_filter/gtf_filter

@@ -470,9 +470,9 @@ function ViashDockerfile {
 FROM python:latest
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component gtf_filter"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:23Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:11Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/gunzip/.config.vsh.yaml

@@ -149,8 +149,8 @@ build_info:
   output: "target/executable/gunzip"
   executable: "target/executable/gunzip/gunzip"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/gunzip/gunzip

@@ -466,9 +466,9 @@ RUN apt-get update && \
   rm -rf /var/lib/apt/lists/*
 
 LABEL org.opencontainers.image.description="Companion container for running component gunzip"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:19Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:07Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/multiqc_custom_biotype/.config.vsh.yaml

@@ -170,8 +170,8 @@ build_info:
   output: "target/executable/multiqc_custom_biotype"
   executable: "target/executable/multiqc_custom_biotype/multiqc_custom_biotype"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/multiqc_custom_biotype/multiqc_custom_biotype

@@ -476,9 +476,9 @@ function ViashDockerfile {
 FROM python:latest
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component multiqc_custom_biotype"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:22Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:10Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/picard_markduplicates/.config.vsh.yaml

@@ -212,8 +212,8 @@ build_info:
   output: "target/executable/picard_markduplicates"
   executable: "target/executable/picard_markduplicates/picard_markduplicates"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/picard_markduplicates/picard_markduplicates

@@ -494,9 +494,9 @@ wget --no-check-certificate https://github.com/broadinstitute/picard/releases/do
 mv picard.jar /usr/local/bin 
 
 LABEL org.opencontainers.image.description="Companion container for running component picard_markduplicates"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:20Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:08Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/prepare_multiqc_input/.config.vsh.yaml

@@ -417,8 +417,8 @@ build_info:
   output: "target/executable/prepare_multiqc_input"
   executable: "target/executable/prepare_multiqc_input/prepare_multiqc_input"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/prepare_multiqc_input/prepare_multiqc_input

@@ -558,9 +558,9 @@ function ViashDockerfile {
 FROM ubuntu:22.04
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component prepare_multiqc_input"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:18Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:06Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/preprocess_transcripts_fasta/.config.vsh.yaml

@@ -143,8 +143,8 @@ build_info:
   output: "target/executable/preprocess_transcripts_fasta"
   executable: "target/executable/preprocess_transcripts_fasta/preprocess_transcripts_fasta"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/preprocess_transcripts_fasta/preprocess_transcripts_fasta

@@ -462,9 +462,9 @@ function ViashDockerfile {
 FROM ubuntu:22.04
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component preprocess_transcripts_fasta"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:20Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:08Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/preseq_lcextrap/.config.vsh.yaml

@@ -196,8 +196,8 @@ build_info:
   output: "target/executable/preseq_lcextrap"
   executable: "target/executable/preseq_lcextrap/preseq_lcextrap"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/preseq_lcextrap/preseq_lcextrap

@@ -495,9 +495,9 @@ mkdir build && cd build && \
 make && make install && make HAVE_HTSLIB=1 all 
 
 LABEL org.opencontainers.image.description="Companion container for running component preseq_lcextrap"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:19Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:07Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/rsem_merge_counts/.config.vsh.yaml

@@ -186,8 +186,8 @@ build_info:
   output: "target/executable/rsem_merge_counts"
   executable: "target/executable/rsem_merge_counts/rsem_merge_counts"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/rsem_merge_counts/rsem_merge_counts

@@ -483,9 +483,9 @@ function ViashDockerfile {
 FROM ubuntu:22.04
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component rsem_merge_counts"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:21Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:09Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/rseqc/rseqc_junctionannotation/.config.vsh.yaml

@@ -265,8 +265,8 @@ build_info:
   output: "target/executable/rseqc/rseqc_junctionannotation"
   executable: "target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation

@@ -519,9 +519,9 @@ RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "RSeQC"
 
 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_junctionannotation"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:21Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:09Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/rseqc/rseqc_junctionsaturation/.config.vsh.yaml

@@ -254,8 +254,8 @@ build_info:
   output: "target/executable/rseqc/rseqc_junctionsaturation"
   executable: "target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation

@@ -522,9 +522,9 @@ RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "RSeQC"
 
 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_junctionsaturation"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:22Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:10Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/rseqc/rseqc_readdistribution/.config.vsh.yaml

@@ -167,8 +167,8 @@ build_info:
   output: "target/executable/rseqc/rseqc_readdistribution"
   executable: "target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution

@@ -474,9 +474,9 @@ RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "RSeQC"
 
 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_readdistribution"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:21Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:09Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/rseqc/rseqc_readduplication/.config.vsh.yaml

@@ -216,8 +216,8 @@ build_info:
   output: "target/executable/rseqc/rseqc_readduplication"
   executable: "target/executable/rseqc/rseqc_readduplication/rseqc_readduplication"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/rseqc/rseqc_readduplication/rseqc_readduplication

@@ -499,9 +499,9 @@ RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "RSeQC"
 
 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_readduplication"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:20Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:08Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/rseqc/rseqc_tin/.config.vsh.yaml

@@ -219,8 +219,8 @@ build_info:
   output: "target/executable/rseqc/rseqc_tin"
   executable: "target/executable/rseqc/rseqc_tin/rseqc_tin"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/rseqc/rseqc_tin/rseqc_tin

@@ -501,9 +501,9 @@ RUN apt-get update && \
 RUN pip3 install RSeQC
 
 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_tin"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:21Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:09Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/sortmerna/.config.vsh.yaml

@@ -197,8 +197,8 @@ build_info:
   output: "target/executable/sortmerna"
   executable: "target/executable/sortmerna/sortmerna"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/sortmerna/sortmerna

@@ -486,9 +486,9 @@ function ViashDockerfile {
 FROM quay.io/biocontainers/sortmerna:4.3.6--h9ee0642_0
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component sortmerna"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:25Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:13Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/stringtie/.config.vsh.yaml

@@ -221,8 +221,8 @@ build_info:
   output: "target/executable/stringtie"
   executable: "target/executable/stringtie/stringtie"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/stringtie/stringtie

@@ -496,9 +496,9 @@ tar -xzf stringtie-2.2.1.Linux_x86_64.tar.gz && \
 cp stringtie-2.2.1.Linux_x86_64/stringtie /usr/local/bin/
 
 LABEL org.opencontainers.image.description="Companion container for running component stringtie"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:25Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:13Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/summarizedexperiment/.config.vsh.yaml

@@ -204,8 +204,8 @@ build_info:
   output: "target/executable/summarizedexperiment"
   executable: "target/executable/summarizedexperiment/summarizedexperiment"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/summarizedexperiment/summarizedexperiment

@@ -487,9 +487,9 @@ RUN Rscript -e 'if (!requireNamespace("BiocManager", quietly = TRUE)) install.pa
   Rscript -e 'if (!requireNamespace("tximeta", quietly = TRUE)) BiocManager::install("tximeta")'
 
 LABEL org.opencontainers.image.description="Companion container for running component summarizedexperiment"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:24Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:13Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/tx2gene/.config.vsh.yaml

@@ -190,8 +190,8 @@ build_info:
   output: "target/executable/tx2gene"
   executable: "target/executable/tx2gene/tx2gene"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/tx2gene/tx2gene

@@ -483,9 +483,9 @@ RUN apt-get update && \
 RUN pip install --upgrade pip
 
 LABEL org.opencontainers.image.description="Companion container for running component tx2gene"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:23Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:11Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/tximport/.config.vsh.yaml

@@ -256,8 +256,8 @@ build_info:
   output: "target/executable/tximport"
   executable: "target/executable/tximport/tximport"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/tximport/tximport

@@ -508,9 +508,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
   Rscript -e 'remotes::install_cran(c("jsonlite"), repos = "https://cran.rstudio.com")'
 
 LABEL org.opencontainers.image.description="Companion container for running component tximport"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:24Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:12Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/ucsc/bedclip/.config.vsh.yaml

@@ -169,8 +169,8 @@ build_info:
   output: "target/executable/ucsc/bedclip"
   executable: "target/executable/ucsc/bedclip/bedclip"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/ucsc/bedclip/bedclip

@@ -473,9 +473,9 @@ RUN apt-get update && \
 RUN rsync -aP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/linux.x86_64/bedClip /usr/local/bin/
 
 LABEL org.opencontainers.image.description="Companion container for running component ucsc bedclip"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:22Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:11Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/ucsc/bedgraphtobigwig/.config.vsh.yaml

@@ -169,8 +169,8 @@ build_info:
   output: "target/executable/ucsc/bedgraphtobigwig"
   executable: "target/executable/ucsc/bedgraphtobigwig/bedgraphtobigwig"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/executable/ucsc/bedgraphtobigwig/bedgraphtobigwig

@@ -473,9 +473,9 @@ RUN apt-get update && \
 RUN rsync -aP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/linux.x86_64/bedGraphToBigWig /usr/local/bin/
 
 LABEL org.opencontainers.image.description="Companion container for running component ucsc bedgraphtobigwig"
-LABEL org.opencontainers.image.created="2024-12-05T08:04:23Z"
+LABEL org.opencontainers.image.created="2024-12-05T14:40:11Z"
-LABEL org.opencontainers.image.source="https://x-access-token/ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+LABEL org.opencontainers.image.source="https://x-access-token/ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="4adb388c7d928eea02bccf890214f3b932b08714"
+LABEL org.opencontainers.image.revision="2b3d511b34246648b934fd1dc99b22e0a71c37f2"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/workflows/genome_alignment_and_quant/.config.vsh.yaml

@@ -595,8 +595,8 @@ build_info:
   output: "target/executable/workflows/genome_alignment_and_quant"
   executable: "target/executable/workflows/genome_alignment_and_quant/genome_alignment_and_quant"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   dependencies:
   - "target/dependencies/vsh/vsh/biobox/main/nextflow/star/star_align_reads"
   - "target/dependencies/vsh/vsh/biobox/main/nextflow/samtools/samtools_sort"

target/executable/workflows/merge_quant_results/.config.vsh.yaml

@@ -283,8 +283,8 @@ build_info:
   output: "target/executable/workflows/merge_quant_results"
   executable: "target/executable/workflows/merge_quant_results/merge_quant_results"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   dependencies:
   - "target/nextflow/tx2gene"
   - "target/nextflow/tximport"

target/executable/workflows/post_processing/.config.vsh.yaml

@@ -482,8 +482,8 @@ build_info:
   output: "target/executable/workflows/post_processing"
   executable: "target/executable/workflows/post_processing/post_processing"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   dependencies:
   - "target/nextflow/picard_markduplicates"
   - "target/dependencies/vsh/vsh/biobox/main/nextflow/samtools/samtools_sort"

target/executable/workflows/pre_processing/.config.vsh.yaml

@@ -637,8 +637,8 @@ build_info:
   output: "target/executable/workflows/pre_processing"
   executable: "target/executable/workflows/pre_processing/pre_processing"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   dependencies:
   - "target/dependencies/vsh/vsh/biobox/main/nextflow/fastqc"
   - "target/dependencies/vsh/vsh/biobox/main/nextflow/umi_tools/umi_tools_extract"

target/executable/workflows/prepare_genome/.config.vsh.yaml

@@ -507,8 +507,8 @@ build_info:
   output: "target/executable/workflows/prepare_genome"
   executable: "target/executable/workflows/prepare_genome/prepare_genome"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   dependencies:
   - "target/nextflow/gunzip"
   - "target/dependencies/vsh/vsh/biobox/main/nextflow/gffread"

target/executable/workflows/pseudo_alignment_and_quant/.config.vsh.yaml

@@ -290,8 +290,8 @@ build_info:
   output: "target/executable/workflows/pseudo_alignment_and_quant"
   executable: "target/executable/workflows/pseudo_alignment_and_quant/pseudo_alignment_and_quant"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   dependencies:
   - "target/dependencies/vsh/vsh/biobox/main/nextflow/salmon/salmon_quant"
   - "target/dependencies/vsh/vsh/biobox/main/nextflow/kallisto/kallisto_quant"

target/executable/workflows/quality_control/.config.vsh.yaml

@@ -1561,8 +1561,8 @@ build_info:
   output: "target/executable/workflows/quality_control"
   executable: "target/executable/workflows/quality_control/quality_control"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   dependencies:
   - "target/dependencies/vsh/vsh/biobox/main/nextflow/rseqc/rseqc_bamstat"
   - "target/dependencies/vsh/vsh/biobox/main/nextflow/rseqc/rseqc_inferexperiment"

target/executable/workflows/rnaseq/.config.vsh.yaml

@@ -2059,8 +2059,8 @@ build_info:
   output: "target/executable/workflows/rnaseq"
   executable: "target/executable/workflows/rnaseq/rnaseq"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   dependencies:
   - "target/nextflow/workflows/prepare_genome"
   - "target/nextflow/cat_fastq"

target/nextflow/bedtools_genomecov/.config.vsh.yaml

@@ -183,8 +183,8 @@ build_info:
   output: "target/nextflow/bedtools_genomecov"
   executable: "target/nextflow/bedtools_genomecov/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/bedtools_genomecov/main.nf

@@ -3039,8 +3039,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/bedtools_genomecov",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/cat_additional_fasta/.config.vsh.yaml

@@ -187,8 +187,8 @@ build_info:
   output: "target/nextflow/cat_additional_fasta"
   executable: "target/nextflow/cat_additional_fasta/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/cat_additional_fasta/main.nf

@@ -3040,8 +3040,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/cat_additional_fasta",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/cat_fastq/.config.vsh.yaml

@@ -174,8 +174,8 @@ build_info:
   output: "target/nextflow/cat_fastq"
   executable: "target/nextflow/cat_fastq/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/cat_fastq/main.nf

@@ -3031,8 +3031,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/cat_fastq",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/deseq2_qc/.config.vsh.yaml

@@ -242,8 +242,8 @@ build_info:
   output: "target/nextflow/deseq2_qc"
   executable: "target/nextflow/deseq2_qc/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/deseq2_qc/main.nf

@@ -3112,8 +3112,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/deseq2_qc",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/dupradar/.config.vsh.yaml

@@ -271,8 +271,8 @@ build_info:
   output: "target/nextflow/dupradar"
   executable: "target/nextflow/dupradar/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/dupradar/main.nf

@@ -3144,8 +3144,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/dupradar",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/getchromsizes/.config.vsh.yaml

@@ -172,8 +172,8 @@ build_info:
   output: "target/nextflow/getchromsizes"
   executable: "target/nextflow/getchromsizes/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/getchromsizes/main.nf

@@ -3021,8 +3021,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/getchromsizes",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/gtf2bed/.config.vsh.yaml

@@ -150,8 +150,8 @@ build_info:
   output: "target/nextflow/gtf2bed"
   executable: "target/nextflow/gtf2bed/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/gtf2bed/main.nf

@@ -3003,8 +3003,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/gtf2bed",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/gtf_filter/.config.vsh.yaml

@@ -160,8 +160,8 @@ build_info:
   output: "target/nextflow/gtf_filter"
   executable: "target/nextflow/gtf_filter/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/gtf_filter/main.nf

@@ -3011,8 +3011,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/gtf_filter",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/gunzip/.config.vsh.yaml

@@ -149,8 +149,8 @@ build_info:
   output: "target/nextflow/gunzip"
   executable: "target/nextflow/gunzip/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/gunzip/main.nf

@@ -3000,8 +3000,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/gunzip",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/multiqc_custom_biotype/.config.vsh.yaml

@@ -170,8 +170,8 @@ build_info:
   output: "target/nextflow/multiqc_custom_biotype"
   executable: "target/nextflow/multiqc_custom_biotype/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/multiqc_custom_biotype/main.nf

@@ -3020,8 +3020,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/multiqc_custom_biotype",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/picard_markduplicates/.config.vsh.yaml

@@ -212,8 +212,8 @@ build_info:
   output: "target/nextflow/picard_markduplicates"
   executable: "target/nextflow/picard_markduplicates/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/picard_markduplicates/main.nf

@@ -3071,8 +3071,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/picard_markduplicates",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/prepare_multiqc_input/.config.vsh.yaml

@@ -417,8 +417,8 @@ build_info:
   output: "target/nextflow/prepare_multiqc_input"
   executable: "target/nextflow/prepare_multiqc_input/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/prepare_multiqc_input/main.nf

@@ -3290,8 +3290,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/prepare_multiqc_input",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/preprocess_transcripts_fasta/.config.vsh.yaml

@@ -143,8 +143,8 @@ build_info:
   output: "target/nextflow/preprocess_transcripts_fasta"
   executable: "target/nextflow/preprocess_transcripts_fasta/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/preprocess_transcripts_fasta/main.nf

@@ -2990,8 +2990,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/preprocess_transcripts_fasta",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/preseq_lcextrap/.config.vsh.yaml

@@ -196,8 +196,8 @@ build_info:
   output: "target/nextflow/preseq_lcextrap"
   executable: "target/nextflow/preseq_lcextrap/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/preseq_lcextrap/main.nf

@@ -3043,8 +3043,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/preseq_lcextrap",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/rsem_merge_counts/.config.vsh.yaml

@@ -186,8 +186,8 @@ build_info:
   output: "target/nextflow/rsem_merge_counts"
   executable: "target/nextflow/rsem_merge_counts/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/rsem_merge_counts/main.nf

@@ -3035,8 +3035,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/rsem_merge_counts",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/rseqc/rseqc_junctionannotation/.config.vsh.yaml

@@ -265,8 +265,8 @@ build_info:
   output: "target/nextflow/rseqc/rseqc_junctionannotation"
   executable: "target/nextflow/rseqc/rseqc_junctionannotation/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/rseqc/rseqc_junctionannotation/main.nf

@@ -3136,8 +3136,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_junctionannotation",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/rseqc/rseqc_junctionsaturation/.config.vsh.yaml

@@ -254,8 +254,8 @@ build_info:
   output: "target/nextflow/rseqc/rseqc_junctionsaturation"
   executable: "target/nextflow/rseqc/rseqc_junctionsaturation/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/rseqc/rseqc_junctionsaturation/main.nf

@@ -3121,8 +3121,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_junctionsaturation",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/rseqc/rseqc_readdistribution/.config.vsh.yaml

@@ -167,8 +167,8 @@ build_info:
   output: "target/nextflow/rseqc/rseqc_readdistribution"
   executable: "target/nextflow/rseqc/rseqc_readdistribution/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"

target/nextflow/rseqc/rseqc_readdistribution/main.nf

@@ -3025,8 +3025,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_readdistribution",
     "viash_version" : "0.9.0",
-    "git_commit" : "4adb388c7d928eea02bccf890214f3b932b08714",
+    "git_commit" : "2b3d511b34246648b934fd1dc99b22e0a71c37f2",
-    "git_remote" : "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+    "git_remote" : "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
     "name" : "rnaseq",

target/nextflow/rseqc/rseqc_readduplication/.config.vsh.yaml

@@ -216,8 +216,8 @@ build_info:
   output: "target/nextflow/rseqc/rseqc_readduplication"
   executable: "target/nextflow/rseqc/rseqc_readduplication/main.nf"
   viash_version: "0.9.0"
-  git_commit: "4adb388c7d928eea02bccf890214f3b932b08714"
+  git_commit: "2b3d511b34246648b934fd1dc99b22e0a71c37f2"
-  git_remote: "https://x-access-token:ghs_MW7eJel8BXirGBmM5nVBbQvzqvrjaH0zDh8H@github.com/viash-hub/rnaseq"
+  git_remote: "https://x-access-token:ghs_mpjpezoXRPhvITbEzvFPaxzcp8yfML2ITu9P@github.com/viash-hub/rnaseq"
 package_config:
   name: "rnaseq"
   version: "main"