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Build branch main with version main (05d48ac)

Browse Source 
Build pipeline: viash-hub.rnaseq.main-c7sdt

Source commit: 05d48ac2f8

Source message: Multiple fixes (#26)

* unset argument if not paired

* fix argument name

* add count_read_pairs argument

* output star log

* move biotypes header file into multiqc_custom_biotype component

* move deseq2 header files into deseq2_qc component

* update output defaults

* use biobox main

* add parameters to example

* update component

* update component

* ribo database processing moved to workflow

* clean code, remove unused arguments
This commit is contained in:
CI
2024-10-25 09:08:46 +00:00
parent 54557aa596
commit fe41adb0c7
298 changed files with 3125 additions and 3983 deletions
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9
target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml
View File

@@ -65,7 +65,7 @@ repositories:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"
@@ -163,9 +163,10 @@ build_info:
output: "target/executable/rseqc/rseqc_bamstat"
executable: "target/executable/rseqc/rseqc_bamstat/rseqc_bamstat"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
git_commit: "05d48ac2f802e6510893b0966727b56adf2d5bf7"
git_remote: "https://x-access-token:ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"
info:
test_resources:
@@ -175,7 +176,7 @@ package_config:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"

8
target/executable/rseqc/rseqc_bamstat/rseqc_bamstat
View File

@@ -477,9 +477,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_bamstat"
LABEL org.opencontainers.image.created="2024-10-04T07:06:24Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b"
LABEL org.opencontainers.image.created="2024-10-25T08:58:44Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="05d48ac2f802e6510893b0966727b56adf2d5bf7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER
@@ -740,7 +740,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_bamstat:main'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rnaseq/rseqc/rseqc_bamstat:main'
fi
# print dockerfile

9
target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml
View File

@@ -88,7 +88,7 @@ repositories:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"
@@ -186,9 +186,10 @@ build_info:
output: "target/executable/rseqc/rseqc_inferexperiment"
executable: "target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
git_commit: "05d48ac2f802e6510893b0966727b56adf2d5bf7"
git_remote: "https://x-access-token:ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"
info:
test_resources:
@@ -198,7 +199,7 @@ package_config:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"

8
target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment
View File

@@ -487,9 +487,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inferexperiment"
LABEL org.opencontainers.image.created="2024-10-04T07:06:22Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b"
LABEL org.opencontainers.image.created="2024-10-25T08:58:43Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="05d48ac2f802e6510893b0966727b56adf2d5bf7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER
@@ -772,7 +772,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_inferexperiment:main'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rnaseq/rseqc/rseqc_inferexperiment:main'
fi
# print dockerfile

9
target/executable/rseqc/rseqc_innerdistance/.config.vsh.yaml
View File

@@ -173,7 +173,7 @@ repositories:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"
@@ -272,9 +272,10 @@ build_info:
output: "target/executable/rseqc/rseqc_innerdistance"
executable: "target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
git_commit: "05d48ac2f802e6510893b0966727b56adf2d5bf7"
git_remote: "https://x-access-token:ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"
info:
test_resources:
@@ -284,7 +285,7 @@ package_config:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"

8
target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance
View File

@@ -529,9 +529,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_innerdistance"
LABEL org.opencontainers.image.created="2024-10-04T07:06:24Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b"
LABEL org.opencontainers.image.created="2024-10-25T08:58:43Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="05d48ac2f802e6510893b0966727b56adf2d5bf7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER
@@ -891,7 +891,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_innerdistance:main'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rnaseq/rseqc/rseqc_innerdistance:main'
fi
# print dockerfile

9
target/executable/rseqc/rseqc_junctionannotation/.config.vsh.yaml
View File

@@ -161,7 +161,7 @@ repositories:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"
@@ -260,9 +260,10 @@ build_info:
output: "target/executable/rseqc/rseqc_junctionannotation"
executable: "target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
git_commit: "05d48ac2f802e6510893b0966727b56adf2d5bf7"
git_remote: "https://x-access-token:ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"
info:
test_resources:
@@ -272,7 +273,7 @@ package_config:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"

8
target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation
View File

@@ -519,9 +519,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_junctionannotation"
LABEL org.opencontainers.image.created="2024-10-04T07:06:24Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b"
LABEL org.opencontainers.image.created="2024-10-25T08:58:44Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="05d48ac2f802e6510893b0966727b56adf2d5bf7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER
@@ -870,7 +870,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_junctionannotation:main'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rnaseq/rseqc/rseqc_junctionannotation:main'
fi
# print dockerfile

9
target/executable/rseqc/rseqc_junctionsaturation/.config.vsh.yaml
View File

@@ -150,7 +150,7 @@ repositories:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"
@@ -249,9 +249,10 @@ build_info:
output: "target/executable/rseqc/rseqc_junctionsaturation"
executable: "target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
git_commit: "05d48ac2f802e6510893b0966727b56adf2d5bf7"
git_remote: "https://x-access-token:ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"
info:
test_resources:
@@ -261,7 +262,7 @@ package_config:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"

8
target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation
View File

@@ -522,9 +522,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_junctionsaturation"
LABEL org.opencontainers.image.created="2024-10-04T07:06:23Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b"
LABEL org.opencontainers.image.created="2024-10-25T08:58:45Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="05d48ac2f802e6510893b0966727b56adf2d5bf7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER
@@ -862,7 +862,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_junctionsaturation:main'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rnaseq/rseqc/rseqc_junctionsaturation:main'
fi
# print dockerfile

9
target/executable/rseqc/rseqc_readdistribution/.config.vsh.yaml
View File

@@ -64,7 +64,7 @@ repositories:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"
@@ -162,9 +162,10 @@ build_info:
output: "target/executable/rseqc/rseqc_readdistribution"
executable: "target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
git_commit: "05d48ac2f802e6510893b0966727b56adf2d5bf7"
git_remote: "https://x-access-token:ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"
info:
test_resources:
@@ -174,7 +175,7 @@ package_config:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"

8
target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution
View File

@@ -474,9 +474,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_readdistribution"
LABEL org.opencontainers.image.created="2024-10-04T07:06:25Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b"
LABEL org.opencontainers.image.created="2024-10-25T08:58:42Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="05d48ac2f802e6510893b0966727b56adf2d5bf7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER
@@ -737,7 +737,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_readdistribution:main'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rnaseq/rseqc/rseqc_readdistribution:main'
fi
# print dockerfile

9
target/executable/rseqc/rseqc_readduplication/.config.vsh.yaml
View File

@@ -112,7 +112,7 @@ repositories:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"
@@ -211,9 +211,10 @@ build_info:
output: "target/executable/rseqc/rseqc_readduplication"
executable: "target/executable/rseqc/rseqc_readduplication/rseqc_readduplication"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
git_commit: "05d48ac2f802e6510893b0966727b56adf2d5bf7"
git_remote: "https://x-access-token:ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"
info:
test_resources:
@@ -223,7 +224,7 @@ package_config:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"

8
target/executable/rseqc/rseqc_readduplication/rseqc_readduplication
View File

@@ -499,9 +499,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_readduplication"
LABEL org.opencontainers.image.created="2024-10-04T07:06:23Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b"
LABEL org.opencontainers.image.created="2024-10-25T08:58:44Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="05d48ac2f802e6510893b0966727b56adf2d5bf7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER
@@ -806,7 +806,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_readduplication:main'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rnaseq/rseqc/rseqc_readduplication:main'
fi
# print dockerfile

9
target/executable/rseqc/rseqc_tin/.config.vsh.yaml
View File

@@ -118,7 +118,7 @@ repositories:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"
@@ -214,9 +214,10 @@ build_info:
output: "target/executable/rseqc/rseqc_tin"
executable: "target/executable/rseqc/rseqc_tin/rseqc_tin"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
git_commit: "05d48ac2f802e6510893b0966727b56adf2d5bf7"
git_remote: "https://x-access-token:ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"
info:
test_resources:
@@ -226,7 +227,7 @@ package_config:
- type: "vsh"
name: "biobox"
repo: "vsh/biobox"
tag: "v0.2.0"
tag: "main"
- type: "vsh"
name: "craftbox"
repo: "craftbox"

8
target/executable/rseqc/rseqc_tin/rseqc_tin
View File

@@ -501,9 +501,9 @@ RUN apt-get update && \
RUN pip3 install RSeQC
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_tin"
LABEL org.opencontainers.image.created="2024-10-04T07:06:23Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b"
LABEL org.opencontainers.image.created="2024-10-25T08:58:43Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="05d48ac2f802e6510893b0966727b56adf2d5bf7"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER
@@ -813,7 +813,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rseqc/rseqc_tin:main'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/rnaseq/rseqc/rseqc_tin:main'
fi
# print dockerfile