Build branch main with version main (05d48ac)

Build pipeline: viash-hub.rnaseq.main-c7sdt

Source commit: 05d48ac2f8

Source message: Multiple fixes (#26)

* unset argument if not paired

* fix argument name

* add count_read_pairs argument

* output star log

* move biotypes header file into multiqc_custom_biotype component

* move deseq2 header files into deseq2_qc component

* update output defaults

* use biobox main

* add parameters to example

* update component

* update component

* ribo database processing moved to workflow

* clean code, remove unused arguments

target/nextflow/cat_additional_fasta/.config.vsh.yaml

@@ -94,7 +94,7 @@ repositories:
 - type: "vsh"
   name: "biobox"
   repo: "vsh/biobox"
-  tag: "v0.2.0"
+  tag: "main"
 - type: "vsh"
   name: "craftbox"
   repo: "craftbox"
@@ -182,9 +182,10 @@ build_info:
   output: "target/nextflow/cat_additional_fasta"
   executable: "target/nextflow/cat_additional_fasta/main.nf"
   viash_version: "0.9.0"
-  git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
-  git_remote: "https://x-access-token:ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
+  git_commit: "05d48ac2f802e6510893b0966727b56adf2d5bf7"
+  git_remote: "https://x-access-token:ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
 package_config:
+  name: "rnaseq"
   version: "main"
   info:
     test_resources:
@@ -194,7 +195,7 @@ package_config:
   - type: "vsh"
     name: "biobox"
     repo: "vsh/biobox"
-    tag: "v0.2.0"
+    tag: "main"
   - type: "vsh"
     name: "craftbox"
     repo: "craftbox"

target/nextflow/cat_additional_fasta/main.nf

@@ -2929,7 +2929,7 @@ meta = [
       "type" : "vsh",
       "name" : "biobox",
       "repo" : "vsh/biobox",
-      "tag" : "v0.2.0"
+      "tag" : "main"
     },
     {
       "type" : "vsh",
@@ -3032,10 +3032,11 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/cat_additional_fasta",
     "viash_version" : "0.9.0",
-    "git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b",
-    "git_remote" : "https://x-access-token:ghs_qP68SGVqiugFlLowIn73iXH8gzJeuD4MgS5A@github.com/viash-hub/rnaseq"
+    "git_commit" : "05d48ac2f802e6510893b0966727b56adf2d5bf7",
+    "git_remote" : "https://x-access-token:ghs_Z6NU8I659v7MJh9nvPEvAbNENWdyYA3AOdw4@github.com/viash-hub/rnaseq"
   },
   "package_config" : {
+    "name" : "rnaseq",
     "version" : "main",
     "info" : {
       "test_resources" : [
@@ -3050,7 +3051,7 @@ meta = [
         "type" : "vsh",
         "name" : "biobox",
         "repo" : "vsh/biobox",
-        "tag" : "v0.2.0"
+        "tag" : "main"
       },
       {
         "type" : "vsh",
@@ -3544,7 +3545,7 @@ meta["defaults"] = [
   directives: readJsonBlob('''{
   "container" : {
     "registry" : "images.viash-hub.com",
-    "image" : "vsh/cat_additional_fasta",
+    "image" : "vsh/rnaseq/cat_additional_fasta",
     "tag" : "main"
   },
   "tag" : "$id"