6 Commits

Author SHA1 Message Date
CI
c00bcda3f8 Build branch main with version main (f52978a)
Build pipeline: viash-hub.rnaseq.main-k4ttq

Source commit: f52978a0e2

Source message: Fix summarizedexperiment build (#42)
2025-05-06 20:05:48 +00:00
CI
d69226987e Build branch main with version main (4adb388)
Build pipeline: viash-hub.rnaseq.main-c9pqm

Source commit: 4adb388c7d

Source message: Merge pull request #29 from viash-hub/add-labels

Add labels (and then some)
2024-12-05 08:52:37 +00:00
CI
93ac6aad2e Build branch main with version main (0c8a7eb)
Build pipeline: viash-hub.rnaseq.main-nn8dl

Source commit: 0c8a7eb648

Source message: remove citation
2024-11-27 11:54:48 +00:00
CI
fe41adb0c7 Build branch main with version main (05d48ac)
Build pipeline: viash-hub.rnaseq.main-c7sdt

Source commit: 05d48ac2f8

Source message: Multiple fixes (#26)

* unset argument if not paired

* fix argument name

* add count_read_pairs argument

* output star log

* move biotypes header file into multiqc_custom_biotype component

* move deseq2 header files into deseq2_qc component

* update output defaults

* use biobox main

* add parameters to example

* update component

* update component

* ribo database processing moved to workflow

* clean code, remove unused arguments
2024-10-25 09:08:46 +00:00
CI
9b29e37466 Build branch main with version main (64aad6a)
Build pipeline: viash-hub.rnaseq.main-4gbdz

Source commit: 64aad6a006

Source message: Merge pull request #22 from viash-hub/define_repositories_in_package_config

define dependency repositories once in the package config
2024-09-14 09:49:51 +00:00
CI
1ebb61f1e8 Build branch main with version main (1e1ffb3)
Build pipeline: vsh-ci-dev-jsbwk

Source commit: 1e1ffb315f

Source message: Merge pull request #17 from viash-hub/add_biobox_modules

- Migrate a number of components to biobox
- Fix tests
- Reduce size of test resources
- Prepare for Viash Hub
2024-09-13 07:41:13 +00:00