Commit Graph

6 Commits

Author SHA1 Message Date
CI
d69226987e Build branch main with version main (4adb388)
Build pipeline: viash-hub.rnaseq.main-c9pqm

Source commit: 4adb388c7d

Source message: Merge pull request #29 from viash-hub/add-labels

Add labels (and then some)
2024-12-05 08:52:37 +00:00
CI
93ac6aad2e Build branch main with version main (0c8a7eb)
Build pipeline: viash-hub.rnaseq.main-nn8dl

Source commit: 0c8a7eb648

Source message: remove citation
2024-11-27 11:54:48 +00:00
CI
14e0d12189 Build branch main with version main (ce40a4a)
Build pipeline: viash-hub.rnaseq.main-b6jtr

Source commit: ce40a4a6d9

Source message: add unit tests
2024-11-27 09:19:16 +00:00
CI
fe41adb0c7 Build branch main with version main (05d48ac)
Build pipeline: viash-hub.rnaseq.main-c7sdt

Source commit: 05d48ac2f8

Source message: Multiple fixes (#26)

* unset argument if not paired

* fix argument name

* add count_read_pairs argument

* output star log

* move biotypes header file into multiqc_custom_biotype component

* move deseq2 header files into deseq2_qc component

* update output defaults

* use biobox main

* add parameters to example

* update component

* update component

* ribo database processing moved to workflow

* clean code, remove unused arguments
2024-10-25 09:08:46 +00:00
CI
c106022744 Build branch main with version main (1d87dc7)
Build pipeline: viash-hub.rnaseq.main-g2rlq

Source commit: 1d87dc7c24

Source message: Multiple fixes (#23)

* multiple fixes

* update arguments and add test

* fix biobox module calls

* fix dependency

* add rsem merge counts

* exclude general stats in multiqc report

* output markduplicates metrics

* rename output reference files
2024-10-01 10:12:28 +00:00
CI
1ebb61f1e8 Build branch main with version main (1e1ffb3)
Build pipeline: vsh-ci-dev-jsbwk

Source commit: 1e1ffb315f

Source message: Merge pull request #17 from viash-hub/add_biobox_modules

- Migrate a number of components to biobox
- Fix tests
- Reduce size of test resources
- Prepare for Viash Hub
2024-09-13 07:41:13 +00:00