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rnaseq/src/kallisto/kallisto_index/test.sh
CI 1ebb61f1e8 Build branch main with version main (1e1ffb3)
Build pipeline: vsh-ci-dev-jsbwk

Source commit: 1e1ffb315f

Source message: Merge pull request #17 from viash-hub/add_biobox_modules

- Migrate a number of components to biobox
- Fix tests
- Reduce size of test resources
- Prepare for Viash Hub
2024-09-13 07:41:13 +00:00

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#!/bin/bash
echo ">>> Testing $meta_functionality_name"
"$meta_executable" \
--transcriptome_fasta "$meta_resources_dir/transcriptome.fasta" \
--kallisto_index Kallisto
echo ">>> Checking whether output exists"
[ ! -f "Kallisto" ] && echo "Kallisto index does not exist!" && exit 1
[ ! -s "Kallisto" ] && echo "Kallisto index is empty!" && exit 1
echo "All tests succeeded!"
exit 0