CI
1ebb61f1e8
Build pipeline: vsh-ci-dev-jsbwk
Source commit: 1e1ffb315f
Source message: Merge pull request #17 from viash-hub/add_biobox_modules
- Migrate a number of components to biobox
- Fix tests
- Reduce size of test resources
- Prepare for Viash Hub
26 lines
1.8 KiB
YAML
26 lines
1.8 KiB
YAML
id: "rnaseq.vsh-methods-description"
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description: "Suggested text and references to use when describing pipeline usage within the methods section of a publication."
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section_name: "nf-core/rnaseq Methods Description"
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section_href: "https://github.com/nf-core/rnaseq"
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plot_type: "html"
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data: |
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<h4>Methods</h4>
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<p>Data was processed using rnaseq.vsh which is a version of the nf-core/rnaseq (v.3.14.0) workflow wriiten using the Viash framework .</p>
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<p>The pipeline was executed with Nextflow v${workflow.nextflow.version} (<a href="https://doi.org/10.1038/nbt.3820">Di Tommaso <em>et al.</em>, 2017</a>) with the following command:</p>
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<pre><code>${workflow.commandLine}</code></pre>
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<h4>References</h4>
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<ul>
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<li>Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., & Notredame, C. (2017). Nextflow enables reproducible computational workflows. Nature Biotechnology, 35(4), 316-319. <a href="https://doi.org/10.1038/nbt.3820">https://doi.org/10.1038/nbt.3820</a></li>
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<li>Ewels, P. A., Peltzer, A., Fillinger, S., Patel, H., Alneberg, J., Wilm, A., Garcia, M. U., Di Tommaso, P., & Nahnsen, S. (2020). The nf-core framework for community-curated bioinformatics pipelines. Nature Biotechnology, 38(3), 276-278. <a href="https://doi.org/10.1038/s41587-020-0439-x">https://doi.org/10.1038/s41587-020-0439-x</a></li>
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<li>VIASH</li>
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</ul>
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<div class="alert alert-info">
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<h5>Notes:</h5>
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<ul>
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${nodoi_text}
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<li>The command above does not include parameters contained in any configs or profiles that may have been used. Ensure the config file is also uploaded with your publication!</li>
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<li>You should also cite all software used within this run. Check the "Software Versions" of this report to get version information.</li>
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</ul>
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</div>
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