CI
1ebb61f1e8
Build pipeline: vsh-ci-dev-jsbwk
Source commit: 1e1ffb315f
Source message: Merge pull request #17 from viash-hub/add_biobox_modules
- Migrate a number of components to biobox
- Fix tests
- Reduce size of test resources
- Prepare for Viash Hub
41 lines
912 B
YAML
41 lines
912 B
YAML
name: "preprocess_transcripts_fasta"
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info:
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migration_info:
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git_repo: https://github.com/nf-core/rnaseq.git
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paths: [modules/local/preprocess_transcripts_fasta_gencode.nf]
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last_sha: 0a1bdcfbb498987643b74e9fccab85ccd9f2a17d
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description: |
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Process transcripts FASTA if GTF file is GENOCODE format
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argument_groups:
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- name: "Input"
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arguments:
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- name: "--transcript_fasta"
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type: file
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required: true
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description: Path of transcripts FASTA file
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- name: "Output"
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arguments:
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- name: "--output"
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type: file
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direction: output
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required: true
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description: Path of processed output FASTA file.
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resources:
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- type: bash_script
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path: script.sh
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test_resources:
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- type: bash_script
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path: test.sh
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- path: /testData/minimal_test/reference/transcriptome.fasta
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engines:
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- type: docker
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image: ubuntu:22.04
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runners:
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- type: executable
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- type: nextflow
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