CI
1ebb61f1e8
Build pipeline: vsh-ci-dev-jsbwk
Source commit: 1e1ffb315f
Source message: Merge pull request #17 from viash-hub/add_biobox_modules
- Migrate a number of components to biobox
- Fix tests
- Reduce size of test resources
- Prepare for Viash Hub
28 lines
778 B
Bash
28 lines
778 B
Bash
#!/bin/bash
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echo ">>> Testing $meta_functionality_name"
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echo ">>> Testing with BAM input"
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"$meta_executable" \
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--paired false \
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--input "$meta_resources_dir/SRR1106616_5M_subset.bam" \
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--output lc_extrap.txt
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echo ">>> Check whether output exists"
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[ ! -f "lc_extrap.txt" ] && echo "Output file does not exist!" && exit 1
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[ ! -s "lc_extrap.txt" ] && echo "Output file is empty!" && exit 1
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rm lc_extrap.txt
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echo ">>> Testing with BED input"
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"$meta_executable" \
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--paired false \
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--input "$meta_resources_dir/a.sorted.bed" \
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--output lc_extrap.txt
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echo ">>> Check whether output exists"
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[ ! -f "lc_extrap.txt" ] && echo "Output file does not exist!" && exit 1
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[ ! -s "lc_extrap.txt" ] && echo "Output file is empty!" && exit 1
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echo "All tests succeeded!"
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exit 0 |