CI
50e78b4b9a
Build pipeline: viash-hub.rnaseq.v0.1-gnwkh
Source commit: fd0354dae8
Source message: Point to new assets dir
24 lines
714 B
Bash
24 lines
714 B
Bash
#!/bin/bash
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set -exo pipefail
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prefix=$(openssl rand -hex 8)
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inner_distance.py \
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-i $par_input \
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-r $par_refgene \
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-o $prefix \
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-k $par_sample_size \
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-l $par_lower_bound_size \
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-u $par_upper_bound_size \
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-s $par_step_size \
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-q $par_map_qual \
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> stdout.txt
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head -n 2 stdout.txt > $par_output_stats
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[[ -f "$prefix.inner_distance.txt" ]] && mv $prefix.inner_distance.txt $par_output_dist
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[[ -f "$prefix.inner_distance_plot.pdf" ]] && mv $prefix.inner_distance_plot.pdf $par_output_plot
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[[ -f "$prefix.inner_distance_plot.r" ]] && mv $prefix.inner_distance_plot.r $par_output_plot_r
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[[ -f "$prefix.inner_distance_freq.txt" ]] && mv $prefix.inner_distance_freq.txt $par_output_freq
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