CI
f6ea42ed13
Build pipeline: viash-hub.rnaseq.bugfix-czsqc
Source commit: 7687d774f2
Source message: Merge remote-tracking branch 'origin/main' into bugfix
39 lines
2.2 KiB
YAML
39 lines
2.2 KiB
YAML
param_list:
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- id: WT_REP1
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fastq_1:
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- https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357070_1.fastq.gz
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- https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357071_1.fastq.gz
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fastq_2:
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- https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357070_2.fastq.gz
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- https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357071_2.fastq.gz
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strandedness: reverse
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- id: WT_REP2
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fastq_1:
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- https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357072_1.fastq.gz
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fastq_2:
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- https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357072_2.fastq.gz
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strandedness: reverse
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- id: RAP1_IAA_30M_REP1
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fastq_1:
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- https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357076_1.fastq.gz
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fastq_2:
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- https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357076_2.fastq.gz
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strandedness: reverse
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- id: RAP1_UNINDUCED_REP1
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fastq_1:
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- https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357073_1.fastq.gz
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strandedness: reverse
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- id: RAP1_UNINDUCED_REP2
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fastq_1:
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- https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357074_1.fastq.gz
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- https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/testdata/GSE110004/SRR6357075_1.fastq.gz
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strandedness: reverse
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fasta: https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/reference/genome.fasta
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gtf: https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/reference/genes.gtf.gz
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additional_fasta: https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/reference/gfp.fa.gz
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transcript_fasta: https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/reference/transcriptome.fasta
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bbsplit_fasta_list: https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/reference/bbsplit_fasta_list.txt
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salmon_index: https://github.com/nf-core/test-datasets/raw/refs/heads/rnaseq/reference/salmon.tar.gz
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