73 lines
2.4 KiB
Markdown
73 lines
2.4 KiB
Markdown
|
|
|
||
|
|
|
||
|
|
# 🛠📦 toolbox
|
||
|
|
|
||
|
|
[](https://web.viash-hub.com/packages/toolbox)
|
||
|
|
[](https://github.com/viash-hub/toolbox)
|
||
|
|
[](https://github.com/viash-hub/toolbox/blob/main/LICENSE)
|
||
|
|
[](https://github.com/viash-hub/toolbox/issues)
|
||
|
|
[](https://viash.io)
|
||
|
|
|
||
|
|
A collection of command-line tools.
|
||
|
|
|
||
|
|
## Objectives
|
||
|
|
|
||
|
|
- **Reusability**: Facilitating the use of components across various
|
||
|
|
projects and contexts.
|
||
|
|
- **Reproducibility**: Ensuring that components are reproducible and can
|
||
|
|
be easily shared.
|
||
|
|
- **Best Practices**: Adhering to established standards in software
|
||
|
|
development and bioinformatics.
|
||
|
|
|
||
|
|
## Contributing
|
||
|
|
|
||
|
|
We encourage contributions from the community. To contribute:
|
||
|
|
|
||
|
|
1. **Fork the Repository**: Start by forking this repository to your
|
||
|
|
account.
|
||
|
|
2. **Develop Your Component**: Create your Viash component, ensuring it
|
||
|
|
aligns with our best practices (detailed below).
|
||
|
|
3. **Submit a Pull Request**: After testing your component, submit a
|
||
|
|
pull request for review.
|
||
|
|
|
||
|
|
## Contribution Guidelines
|
||
|
|
|
||
|
|
The contribution guidelines describes which steps you should follow to
|
||
|
|
contribute a component to this repository.
|
||
|
|
|
||
|
|
1. Find a component to contribute
|
||
|
|
2. Add config template
|
||
|
|
3. Fill in the metadata
|
||
|
|
4. Find a suitable container
|
||
|
|
5. Create help file
|
||
|
|
6. Create or fetch test data
|
||
|
|
7. Add arguments for the input files
|
||
|
|
8. Add arguments for the output files
|
||
|
|
9. Add arguments for the other arguments
|
||
|
|
10. Add a Docker engine
|
||
|
|
11. Write a runner script
|
||
|
|
12. Create test script
|
||
|
|
13. Create a `/var/software_versions.txt` file
|
||
|
|
|
||
|
|
See the
|
||
|
|
[CONTRIBUTING](https://github.com/viash-hub/toolbox/blob/main/CONTRIBUTING.md)
|
||
|
|
file for more details.
|
||
|
|
|
||
|
|
## Support and Community
|
||
|
|
|
||
|
|
For support, questions, or to join our community:
|
||
|
|
|
||
|
|
- **Issues**: Submit questions or issues via the [GitHub issue
|
||
|
|
tracker](https://github.com/viash-hub/toolbox/issues).
|
||
|
|
- **Discussions**: Join our discussions via [GitHub
|
||
|
|
Discussions](https://github.com/viash-hub/toolbox/discussions).
|
||
|
|
|
||
|
|
## License
|
||
|
|
|
||
|
|
This repository is licensed under an MIT license. See the
|
||
|
|
[LICENSE](https://github.com/viash-hub/toolbox/blob/main/LICENSE) file
|
||
|
|
for details.
|