Build branch check-resources with version check-resources (c27e41c)

Build pipeline: viash-hub.toolbox.check-resources-pmqch

Source commit: c27e41c13e

Source message: add better documentation

src/check_resources/config.vsh.yaml

@@ -1,5 +1,16 @@
 name: check_resources
-description: Check for available resources on the system.
+description: |
+  Check for available resources on the system.
+
+  This component is only useful when working with persistent storage environments
+  where all workflow steps execute on the same instance or share the same
+  storage volume. That is, running thus component on e.g. AWS Batch or
+  other cloud-based systems will not work as expected, since each step
+  can run on a different instance and resources will not be shared.
+  
+  For distributed environments, consider integrating resource checks directly
+  into the components that will actually consume the storage, rather than
+  using this standalone check.
 
 argument_groups:
   - name: Inputs

target/executable/bgzip/.config.vsh.yaml

@@ -228,7 +228,7 @@ build_info:
   output: "target/executable/bgzip"
   executable: "target/executable/bgzip/bgzip"
   viash_version: "0.9.4"
-  git_commit: "cfc11db17dde3001289ba6d31c1172dbee58091b"
+  git_commit: "c27e41c13e2c3d367a8279a03eab6464ac758b65"
   git_remote: "https://github.com/viash-hub/toolbox"
 package_config:
   name: "toolbox"

target/executable/bgzip/bgzip

@@ -448,9 +448,9 @@ ENTRYPOINT []
 RUN bgzip -h | grep 'Version:' 2>&1 |  sed 's/Version:\s\(.*\)/bgzip: "\1"/' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component bgzip"
-LABEL org.opencontainers.image.created="2025-06-24T09:06:13Z"
+LABEL org.opencontainers.image.created="2025-06-25T08:37:52Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/htslib"
-LABEL org.opencontainers.image.revision="cfc11db17dde3001289ba6d31c1172dbee58091b"
+LABEL org.opencontainers.image.revision="c27e41c13e2c3d367a8279a03eab6464ac758b65"
 LABEL org.opencontainers.image.version="check-resources"
 
 VIASHDOCKER

target/executable/check_resources/.config.vsh.yaml

@@ -51,7 +51,14 @@ resources:
 - type: "bash_script"
   path: "script.sh"
   is_executable: true
-description: "Check for available resources on the system."
+description: "Check for available resources on the system.\n\nThis component is only\
+  \ useful when working with persistent storage environments\nwhere all workflow steps\
+  \ execute on the same instance or share the same\nstorage volume. That is, running\
+  \ thus component on e.g. AWS Batch or\nother cloud-based systems will not work as\
+  \ expected, since each step\ncan run on a different instance and resources will\
+  \ not be shared.\n\nFor distributed environments, consider integrating resource\
+  \ checks directly\ninto the components that will actually consume the storage, rather\
+  \ than\nusing this standalone check.\n"
 test_resources:
 - type: "bash_script"
   path: "test.sh"
@@ -150,7 +157,7 @@ build_info:
   output: "target/executable/check_resources"
   executable: "target/executable/check_resources/check_resources"
   viash_version: "0.9.4"
-  git_commit: "cfc11db17dde3001289ba6d31c1172dbee58091b"
+  git_commit: "c27e41c13e2c3d367a8279a03eab6464ac758b65"
   git_remote: "https://github.com/viash-hub/toolbox"
 package_config:
   name: "toolbox"

target/executable/check_resources/check_resources

@@ -446,9 +446,9 @@ function ViashDockerfile {
 FROM bash:latest
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component check_resources"
-LABEL org.opencontainers.image.created="2025-06-24T09:06:13Z"
+LABEL org.opencontainers.image.created="2025-06-25T08:37:51Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/toolbox"
-LABEL org.opencontainers.image.revision="cfc11db17dde3001289ba6d31c1172dbee58091b"
+LABEL org.opencontainers.image.revision="c27e41c13e2c3d367a8279a03eab6464ac758b65"
 LABEL org.opencontainers.image.version="check-resources"
 
 VIASHDOCKER
@@ -570,6 +570,16 @@ function ViashHelp {
   echo ""
   echo "Check for available resources on the system."
   echo ""
+  echo "This component is only useful when working with persistent storage environments"
+  echo "where all workflow steps execute on the same instance or share the same"
+  echo "storage volume. That is, running thus component on e.g. AWS Batch or"
+  echo "other cloud-based systems will not work as expected, since each step"
+  echo "can run on a different instance and resources will not be shared."
+  echo ""
+  echo "For distributed environments, consider integrating resource checks directly"
+  echo "into the components that will actually consume the storage, rather than"
+  echo "using this standalone check."
+  echo ""
   echo "Inputs:"
   echo "    --tmp_space_required"
   echo "        type: integer"

target/executable/yq/.config.vsh.yaml

@@ -258,7 +258,7 @@ build_info:
   output: "target/executable/yq"
   executable: "target/executable/yq/yq"
   viash_version: "0.9.4"
-  git_commit: "cfc11db17dde3001289ba6d31c1172dbee58091b"
+  git_commit: "c27e41c13e2c3d367a8279a03eab6464ac758b65"
   git_remote: "https://github.com/viash-hub/toolbox"
 package_config:
   name: "toolbox"

target/executable/yq/yq

@@ -450,9 +450,9 @@ RUN apk add --no-cache bash yq-go
 RUN /usr/bin/yq --version | sed 's/.*version\sv\(.*\)/yq: "\1"/' > /var/software_versions.txt
 
 LABEL org.opencontainers.image.description="Companion container for running component yq"
-LABEL org.opencontainers.image.created="2025-06-24T09:06:13Z"
+LABEL org.opencontainers.image.created="2025-06-25T08:37:52Z"
 LABEL org.opencontainers.image.source="https://github.com/mikefarah/yq"
-LABEL org.opencontainers.image.revision="cfc11db17dde3001289ba6d31c1172dbee58091b"
+LABEL org.opencontainers.image.revision="c27e41c13e2c3d367a8279a03eab6464ac758b65"
 LABEL org.opencontainers.image.version="check-resources"
 
 VIASHDOCKER

target/nextflow/bgzip/.config.vsh.yaml

@@ -228,7 +228,7 @@ build_info:
   output: "target/nextflow/bgzip"
   executable: "target/nextflow/bgzip/main.nf"
   viash_version: "0.9.4"
-  git_commit: "cfc11db17dde3001289ba6d31c1172dbee58091b"
+  git_commit: "c27e41c13e2c3d367a8279a03eab6464ac758b65"
   git_remote: "https://github.com/viash-hub/toolbox"
 package_config:
   name: "toolbox"

target/nextflow/bgzip/main.nf

@@ -3317,7 +3317,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/bgzip",
     "viash_version" : "0.9.4",
-    "git_commit" : "cfc11db17dde3001289ba6d31c1172dbee58091b",
+    "git_commit" : "c27e41c13e2c3d367a8279a03eab6464ac758b65",
     "git_remote" : "https://github.com/viash-hub/toolbox"
   },
   "package_config" : {

target/nextflow/check_resources/.config.vsh.yaml

@@ -51,7 +51,14 @@ resources:
 - type: "bash_script"
   path: "script.sh"
   is_executable: true
-description: "Check for available resources on the system."
+description: "Check for available resources on the system.\n\nThis component is only\
+  \ useful when working with persistent storage environments\nwhere all workflow steps\
+  \ execute on the same instance or share the same\nstorage volume. That is, running\
+  \ thus component on e.g. AWS Batch or\nother cloud-based systems will not work as\
+  \ expected, since each step\ncan run on a different instance and resources will\
+  \ not be shared.\n\nFor distributed environments, consider integrating resource\
+  \ checks directly\ninto the components that will actually consume the storage, rather\
+  \ than\nusing this standalone check.\n"
 test_resources:
 - type: "bash_script"
   path: "test.sh"
@@ -150,7 +157,7 @@ build_info:
   output: "target/nextflow/check_resources"
   executable: "target/nextflow/check_resources/main.nf"
   viash_version: "0.9.4"
-  git_commit: "cfc11db17dde3001289ba6d31c1172dbee58091b"
+  git_commit: "c27e41c13e2c3d367a8279a03eab6464ac758b65"
   git_remote: "https://github.com/viash-hub/toolbox"
 package_config:
   name: "toolbox"

target/nextflow/check_resources/main.nf

@@ -3100,7 +3100,7 @@ meta = [
       "is_executable" : true
     }
   ],
-  "description" : "Check for available resources on the system.",
+  "description" : "Check for available resources on the system.\n\nThis component is only useful when working with persistent storage environments\nwhere all workflow steps execute on the same instance or share the same\nstorage volume. That is, running thus component on e.g. AWS Batch or\nother cloud-based systems will not work as expected, since each step\ncan run on a different instance and resources will not be shared.\n\nFor distributed environments, consider integrating resource checks directly\ninto the components that will actually consume the storage, rather than\nusing this standalone check.\n",
   "test_resources" : [
     {
       "type" : "bash_script",
@@ -3216,7 +3216,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/check_resources",
     "viash_version" : "0.9.4",
-    "git_commit" : "cfc11db17dde3001289ba6d31c1172dbee58091b",
+    "git_commit" : "c27e41c13e2c3d367a8279a03eab6464ac758b65",
     "git_remote" : "https://github.com/viash-hub/toolbox"
   },
   "package_config" : {

target/nextflow/check_resources/nextflow.config

@@ -3,7 +3,7 @@ manifest {
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
   version = 'check-resources'
-  description = 'Check for available resources on the system.'
+  description = 'Check for available resources on the system.\n\nThis component is only useful when working with persistent storage environments\nwhere all workflow steps execute on the same instance or share the same\nstorage volume. That is, running thus component on e.g. AWS Batch or\nother cloud-based systems will not work as expected, since each step\ncan run on a different instance and resources will not be shared.\n\nFor distributed environments, consider integrating resource checks directly\ninto the components that will actually consume the storage, rather than\nusing this standalone check.\n'
 }
 
 process.container = 'nextflow/bash:latest'

target/nextflow/check_resources/nextflow_schema.json

@@ -1,7 +1,7 @@
 {
   "$schema": "https://json-schema.org/draft/2020-12/schema",
   "title": "check_resources",
-  "description": "Check for available resources on the system.",
+  "description": "Check for available resources on the system.\n\nThis component is only useful when working with persistent storage environments\nwhere all workflow steps execute on the same instance or share the same\nstorage volume. That is, running thus component on e.g. AWS Batch or\nother cloud-based systems will not work as expected, since each step\ncan run on a different instance and resources will not be shared.\n\nFor distributed environments, consider integrating resource checks directly\ninto the components that will actually consume the storage, rather than\nusing this standalone check.\n",
   "type": "object",
   "$defs": {
     "inputs": {

target/nextflow/yq/.config.vsh.yaml

@@ -258,7 +258,7 @@ build_info:
   output: "target/nextflow/yq"
   executable: "target/nextflow/yq/main.nf"
   viash_version: "0.9.4"
-  git_commit: "cfc11db17dde3001289ba6d31c1172dbee58091b"
+  git_commit: "c27e41c13e2c3d367a8279a03eab6464ac758b65"
   git_remote: "https://github.com/viash-hub/toolbox"
 package_config:
   name: "toolbox"

target/nextflow/yq/main.nf

@@ -3330,7 +3330,7 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/yq",
     "viash_version" : "0.9.4",
-    "git_commit" : "cfc11db17dde3001289ba6d31c1172dbee58091b",
+    "git_commit" : "c27e41c13e2c3d367a8279a03eab6464ac758b65",
     "git_remote" : "https://github.com/viash-hub/toolbox"
   },
   "package_config" : {