CI
13b6d2421b
Build pipeline: viash-hub.toolbox.check-resources-cxbsm
Source commit: cfc11db17d
Source message: add changelog entry
128 lines
4.2 KiB
JSON
128 lines
4.2 KiB
JSON
{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"title": "bgzip",
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"description": "Block compression/decompression utility",
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"type": "object",
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"$defs": {
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"inputs": {
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"title": "Inputs",
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"type": "object",
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"description": "No description",
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"properties": {
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"input": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "file to be compressed or decompressed",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`. "
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}
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}
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},
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"outputs": {
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"title": "Outputs",
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"type": "object",
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"description": "No description",
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"properties": {
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"output": {
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"type": "string",
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"format": "path",
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"description": "compressed or decompressed output",
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"help_text": "Type: `file`, multiple: `False`, required, default: `\"$id.$key.output\"`, direction: `output`. ",
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"default": "$id.$key.output"
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},
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"index_name": {
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"type": "string",
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"format": "path",
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"description": "name of BGZF index file [file.gz.gzi]",
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"help_text": "Type: `file`, multiple: `False`, default: `\"$id.$key.index_name\"`, direction: `output`. ",
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"default": "$id.$key.index_name"
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}
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}
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},
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"arguments": {
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"title": "Arguments",
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"type": "object",
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"description": "No description",
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"properties": {
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"offset": {
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"type": "integer",
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"description": "decompress at virtual file pointer (0-based uncompressed offset)",
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"help_text": "Type: `integer`, multiple: `False`. "
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},
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"decompress": {
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"type": "boolean",
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"description": "decompress the input file",
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"help_text": "Type: `boolean_true`, multiple: `False`, default: `false`. ",
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"default": false
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},
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"rebgzip": {
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"type": "boolean",
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"description": "use an index file to bgzip a file",
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"help_text": "Type: `boolean_true`, multiple: `False`, default: `false`. ",
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"default": false
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},
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"index": {
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"type": "boolean",
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"description": "compress and create BGZF index",
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"help_text": "Type: `boolean_true`, multiple: `False`, default: `false`. ",
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"default": false
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},
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"compress_level": {
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"type": "integer",
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"description": "compression level to use when compressing; 0 to 9, or -1 for default [-1]",
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"help_text": "Type: `integer`, multiple: `False`. "
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},
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"reindex": {
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"type": "boolean",
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"description": "(re)index the output file",
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"help_text": "Type: `boolean_true`, multiple: `False`, default: `false`. ",
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"default": false
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},
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"size": {
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"type": "integer",
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"description": "decompress INT bytes (uncompressed size)",
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"help_text": "Type: `integer`, multiple: `False`. "
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},
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"test": {
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"type": "boolean",
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"description": "test integrity of compressed file",
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"help_text": "Type: `boolean_true`, multiple: `False`, default: `false`. ",
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"default": false
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},
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"binary": {
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"type": "boolean",
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"description": "Don't align blocks with text lines",
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"help_text": "Type: `boolean_true`, multiple: `False`, default: `false`. ",
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"default": false
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}
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}
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},
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"nextflow input-output arguments": {
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"title": "Nextflow input-output arguments",
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"type": "object",
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"description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.",
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"properties": {
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"publish_dir": {
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"type": "string",
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"description": "Path to an output directory.",
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"help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. "
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}
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}
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}
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},
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"allOf": [
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{
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"$ref": "#/$defs/inputs"
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},
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{
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"$ref": "#/$defs/outputs"
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},
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{
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"$ref": "#/$defs/arguments"
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},
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{
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"$ref": "#/$defs/nextflow input-output arguments"
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}
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]
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}
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