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Build branch main with version main (6e6b139)

Browse Source 
Build pipeline: viash-hub.biobox.main-ndljn

Source commit: 6e6b13939c

Source message: nanoplot (#95)

* nanoplot

* test_data

* reinitiate

* gitignore

* namespace

* Testing NanoPlot in CLI

* NanoPlot complete

* Updated docker engine

* Docker

* Delete taget directory

* Deleted

* Input file

* fastq with more reads

* Delete config.vsh.yaml

* Pull request changes

* Delete var directory

* Config arguments complete

* Update help.txt

* Update config file

* Test files

* runners script

* gitignore default

* Move output

* Delete output directory

* Runners script complete

* Test script

* default output

* test data

* params passed correctly

* outdir

* test script

* input files

* all test files

* test data < 100 KB

* test script update

* Update CHANGELOG.md

* Update CHANGELOG.md

* Test cases in directories

* rm .gz .pickle .feather files

* reduce test input size

* Multiple separator ";" and check there is only one input file

---------

Co-authored-by: jakubmajercik <jakub.majercik@gmail.com>
Co-authored-by: Emma Rousseau <emmarou1@icloud.com>
This commit is contained in:
CI
2024-10-26 10:17:08 +00:00
parent 0cdbd262c7
commit 5ae0d0b0ba
287 changed files with 10378 additions and 739 deletions
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6
target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml
View File

@@ -359,9 +359,9 @@ build_info:
output: "target/executable/bbmap/bbmap_bbsplit"
executable: "target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit"
viash_version: "0.9.0"
git_commit: "7fb67a98539868b9af788338fb5f46d34ab742f7"
git_remote: "https://x-access-token:ghs_lv5GvifOUhTQDSxrDFIWt5FoCBy00e2Tt6iO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-11-g7fb67a9"
git_commit: "6e6b13939c9d719f1cd7ff5a91a6562e0a6e2e29"
git_remote: "https://x-access-token:ghs_yMJ96XEhcHROF2pqaopOfHbmZnWq3J2wWhaj@github.com/viash-hub/biobox"
git_tag: "v0.2.0-12-g6e6b139"
package_config:
name: "biobox"
version: "main"

4
target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit
View File

@@ -600,9 +600,9 @@ cp -r bbmap/* /usr/local/bin
RUN bbsplit.sh --version 2>&1 | awk '/BBMap version/{print "BBMAP:", $NF}' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component bbmap bbmap_bbsplit"
LABEL org.opencontainers.image.created="2024-10-18T09:18:59Z"
LABEL org.opencontainers.image.created="2024-10-26T09:56:54Z"
LABEL org.opencontainers.image.source="https://github.com/BioInfoTools/BBMap/blob/master/sh/bbsplit.sh"
LABEL org.opencontainers.image.revision="7fb67a98539868b9af788338fb5f46d34ab742f7"
LABEL org.opencontainers.image.revision="6e6b13939c9d719f1cd7ff5a91a6562e0a6e2e29"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER