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Build branch main with version main (065297b)

Browse Source 
Build pipeline: viash-hub.biobox.main-nh6xw

Source commit: 065297be5f

Source message: Add sgdemux (#166)
This commit is contained in:
CI
2024-11-14 13:36:35 +00:00
parent dffc02813f
commit 6b56570131
349 changed files with 9309 additions and 869 deletions
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6
target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
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@@ -235,9 +235,9 @@ build_info:
output: "target/executable/agat/agat_convert_bed2gff"
executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

4
target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
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@@ -515,9 +515,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff"
LABEL org.opencontainers.image.created="2024-11-08T09:44:57Z"
LABEL org.opencontainers.image.created="2024-11-14T13:16:47Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
View File

@@ -225,9 +225,9 @@ build_info:
output: "target/executable/agat/agat_convert_embl2gff"
executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

4
target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
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@@ -505,9 +505,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff"
LABEL org.opencontainers.image.created="2024-11-08T09:44:59Z"
LABEL org.opencontainers.image.created="2024-11-14T13:16:49Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml
View File

@@ -230,9 +230,9 @@ build_info:
output: "target/executable/agat/agat_convert_genscan2gff"
executable: "target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

4
target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff
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@@ -514,9 +514,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_genscan2gff"
LABEL org.opencontainers.image.created="2024-11-08T09:44:59Z"
LABEL org.opencontainers.image.created="2024-11-14T13:16:50Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml
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@@ -186,9 +186,9 @@ build_info:
output: "target/executable/agat/agat_convert_mfannot2gff"
executable: "target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

4
target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff
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@@ -480,9 +480,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_mfannot2gff"
LABEL org.opencontainers.image.created="2024-11-08T09:45:10Z"
LABEL org.opencontainers.image.created="2024-11-14T13:17:02Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
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@@ -228,9 +228,9 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gff2gtf"
executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

4
target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
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@@ -519,9 +519,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf"
LABEL org.opencontainers.image.created="2024-11-08T09:44:57Z"
LABEL org.opencontainers.image.created="2024-11-14T13:16:47Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
View File

@@ -188,9 +188,9 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gff2tsv"
executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

4
target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
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@@ -484,9 +484,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv"
LABEL org.opencontainers.image.created="2024-11-08T09:44:58Z"
LABEL org.opencontainers.image.created="2024-11-14T13:16:48Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
View File

@@ -195,9 +195,9 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gxf2gxf"
executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

4
target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
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@@ -493,9 +493,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf"
LABEL org.opencontainers.image.created="2024-11-08T09:45:10Z"
LABEL org.opencontainers.image.created="2024-11-14T13:16:46Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/agat/agat_sp_add_introns/.config.vsh.yaml
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@@ -186,9 +186,9 @@ build_info:
output: "target/executable/agat/agat_sp_add_introns"
executable: "target/executable/agat/agat_sp_add_introns/agat_sp_add_introns"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

4
target/executable/agat/agat_sp_add_introns/agat_sp_add_introns
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@@ -479,9 +479,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_add_introns"
LABEL org.opencontainers.image.created="2024-11-08T09:44:57Z"
LABEL org.opencontainers.image.created="2024-11-14T13:16:48Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml
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@@ -236,9 +236,9 @@ build_info:
output: "target/executable/agat/agat_sp_filter_feature_from_kill_list"
executable: "target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

4
target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list
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@@ -517,9 +517,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_filter_feature_from_kill_list"
LABEL org.opencontainers.image.created="2024-11-08T09:44:59Z"
LABEL org.opencontainers.image.created="2024-11-14T13:16:49Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml
View File

@@ -184,9 +184,9 @@ build_info:
output: "target/executable/agat/agat_sp_merge_annotations"
executable: "target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

4
target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations
View File

@@ -482,9 +482,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_merge_annotations"
LABEL org.opencontainers.image.created="2024-11-08T09:44:58Z"
LABEL org.opencontainers.image.created="2024-11-14T13:16:49Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/agat/agat_sp_statistics/.config.vsh.yaml
View File

@@ -231,9 +231,9 @@ build_info:
output: "target/executable/agat/agat_sp_statistics"
executable: "target/executable/agat/agat_sp_statistics/agat_sp_statistics"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

4
target/executable/agat/agat_sp_statistics/agat_sp_statistics
View File

@@ -507,9 +507,9 @@ RUN agat --version | sed 's/.*v\.//; s/\s.*//' | sed 's/^/AGAT: /' > /var/softwa
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_statistics"
LABEL org.opencontainers.image.created="2024-11-08T09:44:58Z"
LABEL org.opencontainers.image.created="2024-11-14T13:16:48Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml
View File

@@ -227,9 +227,9 @@ build_info:
output: "target/executable/agat/agat_sq_stat_basic"
executable: "target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

4
target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic
View File

@@ -507,9 +507,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_sq_stat_basic"
LABEL org.opencontainers.image.created="2024-11-08T09:45:10Z"
LABEL org.opencontainers.image.created="2024-11-14T13:17:02Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1d17ce01e25569c8e898b8160af1480ad22fc986"
LABEL org.opencontainers.image.revision="065297be5fb2d88020fc50e042bb3f49c9254ae9"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER