Build branch v0.1 with version v0.1.0 (b84b297)

Build pipeline: viash-hub.biobox.v0.1-8mh8l

Source commit: b84b29747d

Source message: Bump version to v0.1.0
This commit is contained in:
CI
2024-06-24 09:29:14 +00:00
parent 56a195f1bb
commit 7645430e58
168 changed files with 19904 additions and 2168 deletions

View File

@@ -1,5 +1,5 @@
name: "featurecounts"
version: "v0.1"
version: "v0.1.0"
argument_groups:
- name: "Inputs"
arguments:
@@ -613,7 +613,7 @@ engines:
id: "docker"
image: "quay.io/biocontainers/subread:2.0.6--he4a0461_0"
target_registry: "images.viash-hub.com"
target_tag: "v0.1"
target_tag: "v0.1.0"
namespace_separator: "/"
setup:
- type: "docker"
@@ -631,11 +631,11 @@ build_info:
output: "target/executable/featurecounts"
executable: "target/executable/featurecounts/featurecounts"
viash_version: "0.9.0-RC6"
git_commit: "d97e3156feb1839752aa080bfbe8a2153489dfd6"
git_commit: "b84b29747d0635f2ac83ea63b496be9a9edb6724"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"
version: "v0.1"
version: "v0.1.0"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0-RC6"
@@ -645,16 +645,13 @@ package_config:
- ".requirements.commands := ['ps']\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.1'"
- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
keywords:
- "bioinformatics"
- "sequence"
- "alignment"
- "variant calling"
- "dna"
- "rna"
- "modules"
- "sequencing"
license: "MIT"
organization: "vsh"
links:
repository: "https://github.com/viash-hub/biobbox"
repository: "https://github.com/viash-hub/biobox"
issue_tracker: "https://github.com/viash-hub/biobox/issues"

View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# featurecounts v0.1
# featurecounts v0.1.0
#
# This wrapper script is auto-generated by viash 0.9.0-RC6 and is thus a
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
@@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "featurecounts v0.1"
echo "featurecounts v0.1.0"
echo ""
echo "featureCounts is a read summarization program for counting reads generated from"
echo "either RNA or genomic DNA sequencing experiments by implementing highly"
@@ -749,10 +749,10 @@ ENTRYPOINT []
RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component featurecounts"
LABEL org.opencontainers.image.created="2024-06-24T08:43:59Z"
LABEL org.opencontainers.image.created="2024-06-24T09:12:30Z"
LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread"
LABEL org.opencontainers.image.revision="d97e3156feb1839752aa080bfbe8a2153489dfd6"
LABEL org.opencontainers.image.version="v0.1"
LABEL org.opencontainers.image.revision="b84b29747d0635f2ac83ea63b496be9a9edb6724"
LABEL org.opencontainers.image.version="v0.1.0"
VIASHDOCKER
fi
@@ -875,7 +875,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "featurecounts v0.1"
echo "featurecounts v0.1.0"
exit
;;
--annotation)
@@ -1467,7 +1467,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/featurecounts:v0.1'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/featurecounts:v0.1.0'
fi
# print dockerfile