Build branch v0.1 with version v0.1.0 (b84b297)
Build pipeline: viash-hub.biobox.v0.1-8mh8l
Source commit: b84b29747d
Source message: Bump version to v0.1.0
This commit is contained in:
@@ -1,5 +1,5 @@
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name: "featurecounts"
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version: "v0.1"
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version: "v0.1.0"
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argument_groups:
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- name: "Inputs"
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arguments:
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@@ -613,7 +613,7 @@ engines:
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id: "docker"
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image: "quay.io/biocontainers/subread:2.0.6--he4a0461_0"
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target_registry: "images.viash-hub.com"
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target_tag: "v0.1"
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target_tag: "v0.1.0"
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namespace_separator: "/"
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setup:
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- type: "docker"
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@@ -631,11 +631,11 @@ build_info:
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output: "target/executable/featurecounts"
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executable: "target/executable/featurecounts/featurecounts"
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viash_version: "0.9.0-RC6"
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git_commit: "d97e3156feb1839752aa080bfbe8a2153489dfd6"
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git_commit: "b84b29747d0635f2ac83ea63b496be9a9edb6724"
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git_remote: "https://github.com/viash-hub/biobox"
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package_config:
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name: "biobox"
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version: "v0.1"
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version: "v0.1.0"
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description: "A collection of bioinformatics tools for working with sequence data.\n"
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info: null
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viash_version: "0.9.0-RC6"
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@@ -645,16 +645,13 @@ package_config:
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- ".requirements.commands := ['ps']\n"
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- ".engines += { type: \"native\" }"
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- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
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- ".engines[.type == 'docker'].target_tag := 'v0.1'"
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- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
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keywords:
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- "bioinformatics"
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- "sequence"
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- "alignment"
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- "variant calling"
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- "dna"
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- "rna"
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- "modules"
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- "sequencing"
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license: "MIT"
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organization: "vsh"
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links:
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repository: "https://github.com/viash-hub/biobbox"
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repository: "https://github.com/viash-hub/biobox"
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issue_tracker: "https://github.com/viash-hub/biobox/issues"
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@@ -1,6 +1,6 @@
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#!/usr/bin/env bash
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# featurecounts v0.1
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# featurecounts v0.1.0
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#
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# This wrapper script is auto-generated by viash 0.9.0-RC6 and is thus a
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# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
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@@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
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# ViashHelp: Display helpful explanation about this executable
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function ViashHelp {
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echo "featurecounts v0.1"
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echo "featurecounts v0.1.0"
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echo ""
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echo "featureCounts is a read summarization program for counting reads generated from"
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echo "either RNA or genomic DNA sequencing experiments by implementing highly"
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@@ -749,10 +749,10 @@ ENTRYPOINT []
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RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/' > /var/software_versions.txt
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LABEL org.opencontainers.image.description="Companion container for running component featurecounts"
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LABEL org.opencontainers.image.created="2024-06-24T08:43:59Z"
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LABEL org.opencontainers.image.created="2024-06-24T09:12:30Z"
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LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread"
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LABEL org.opencontainers.image.revision="d97e3156feb1839752aa080bfbe8a2153489dfd6"
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LABEL org.opencontainers.image.version="v0.1"
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LABEL org.opencontainers.image.revision="b84b29747d0635f2ac83ea63b496be9a9edb6724"
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LABEL org.opencontainers.image.version="v0.1.0"
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VIASHDOCKER
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fi
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@@ -875,7 +875,7 @@ while [[ $# -gt 0 ]]; do
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shift 1
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;;
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--version)
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echo "featurecounts v0.1"
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echo "featurecounts v0.1.0"
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exit
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;;
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--annotation)
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@@ -1467,7 +1467,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
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# determine docker image id
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if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
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VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/featurecounts:v0.1'
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VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/featurecounts:v0.1.0'
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fi
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# print dockerfile
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