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Build branch main with version main (237a2e3)

Browse Source 
Build pipeline: viash-hub.biobox.main-dqhhg

Source commit: 237a2e3a22

Source message: Fixes the typo raised in issue #132 (#157)

* Fixes the typo raised in issue #132

* Add changelog entry

* fix typo, modify script

---------

Co-authored-by: jakubmajercik <jakub.majercik@gmail.com>
This commit is contained in:
CI
2024-09-27 10:17:59 +00:00
parent 6a8cd85cf3
commit 99b76ba2a1
270 changed files with 11019 additions and 728 deletions
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6
target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
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@@ -187,9 +187,9 @@ build_info:
output: "target/executable/bedtools/bedtools_bamtofastq"
executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq"
viash_version: "0.9.0"
git_commit: "bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
git_remote: "https://x-access-token:ghs_lSKHBbqnO6mkOoPjjavM2ghphcCkFP1NX9Uo@github.com/viash-hub/biobox"
git_tag: "v0.2.0-5-gbc9cc0a"
git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58"
git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox"
git_tag: "v0.2.0-7-g237a2e3"
package_config:
name: "biobox"
version: "main"

4
target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
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@@ -483,9 +483,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq"
LABEL org.opencontainers.image.created="2024-09-19T03:54:07Z"
LABEL org.opencontainers.image.created="2024-09-27T09:55:04Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
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@@ -176,9 +176,9 @@ build_info:
output: "target/executable/bedtools/bedtools_bed12tobed6"
executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6"
viash_version: "0.9.0"
git_commit: "bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
git_remote: "https://x-access-token:ghs_lSKHBbqnO6mkOoPjjavM2ghphcCkFP1NX9Uo@github.com/viash-hub/biobox"
git_tag: "v0.2.0-5-gbc9cc0a"
git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58"
git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox"
git_tag: "v0.2.0-7-g237a2e3"
package_config:
name: "biobox"
version: "main"

4
target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
View File

@@ -480,9 +480,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6"
LABEL org.opencontainers.image.created="2024-09-19T03:54:06Z"
LABEL org.opencontainers.image.created="2024-09-27T09:55:02Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
View File

@@ -214,9 +214,9 @@ build_info:
output: "target/executable/bedtools/bedtools_bedtobam"
executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam"
viash_version: "0.9.0"
git_commit: "bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
git_remote: "https://x-access-token:ghs_lSKHBbqnO6mkOoPjjavM2ghphcCkFP1NX9Uo@github.com/viash-hub/biobox"
git_tag: "v0.2.0-5-gbc9cc0a"
git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58"
git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox"
git_tag: "v0.2.0-7-g237a2e3"
package_config:
name: "biobox"
version: "main"

4
target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
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@@ -496,9 +496,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam"
LABEL org.opencontainers.image.created="2024-09-19T03:54:08Z"
LABEL org.opencontainers.image.created="2024-09-27T09:55:05Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml
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@@ -337,9 +337,9 @@ build_info:
output: "target/executable/bedtools/bedtools_genomecov"
executable: "target/executable/bedtools/bedtools_genomecov/bedtools_genomecov"
viash_version: "0.9.0"
git_commit: "bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
git_remote: "https://x-access-token:ghs_lSKHBbqnO6mkOoPjjavM2ghphcCkFP1NX9Uo@github.com/viash-hub/biobox"
git_tag: "v0.2.0-5-gbc9cc0a"
git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58"
git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox"
git_tag: "v0.2.0-7-g237a2e3"
package_config:
name: "biobox"
version: "main"

4
target/executable/bedtools/bedtools_genomecov/bedtools_genomecov
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@@ -591,9 +591,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_genomecov"
LABEL org.opencontainers.image.created="2024-09-19T03:54:06Z"
LABEL org.opencontainers.image.created="2024-09-27T09:55:02Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
View File

@@ -232,9 +232,9 @@ build_info:
output: "target/executable/bedtools/bedtools_getfasta"
executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
viash_version: "0.9.0"
git_commit: "bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
git_remote: "https://x-access-token:ghs_lSKHBbqnO6mkOoPjjavM2ghphcCkFP1NX9Uo@github.com/viash-hub/biobox"
git_tag: "v0.2.0-5-gbc9cc0a"
git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58"
git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox"
git_tag: "v0.2.0-7-g237a2e3"
package_config:
name: "biobox"
version: "main"

4
target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
View File

@@ -526,9 +526,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
LABEL org.opencontainers.image.created="2024-09-19T03:54:06Z"
LABEL org.opencontainers.image.created="2024-09-27T09:55:02Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
View File

@@ -273,9 +273,9 @@ build_info:
output: "target/executable/bedtools/bedtools_groupby"
executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby"
viash_version: "0.9.0"
git_commit: "bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
git_remote: "https://x-access-token:ghs_lSKHBbqnO6mkOoPjjavM2ghphcCkFP1NX9Uo@github.com/viash-hub/biobox"
git_tag: "v0.2.0-5-gbc9cc0a"
git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58"
git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox"
git_tag: "v0.2.0-7-g237a2e3"
package_config:
name: "biobox"
version: "main"

4
target/executable/bedtools/bedtools_groupby/bedtools_groupby
View File

@@ -552,9 +552,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby"
LABEL org.opencontainers.image.created="2024-09-19T03:54:08Z"
LABEL org.opencontainers.image.created="2024-09-27T09:55:04Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
View File

@@ -410,9 +410,9 @@ build_info:
output: "target/executable/bedtools/bedtools_intersect"
executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect"
viash_version: "0.9.0"
git_commit: "bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
git_remote: "https://x-access-token:ghs_lSKHBbqnO6mkOoPjjavM2ghphcCkFP1NX9Uo@github.com/viash-hub/biobox"
git_tag: "v0.2.0-5-gbc9cc0a"
git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58"
git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox"
git_tag: "v0.2.0-7-g237a2e3"
package_config:
name: "biobox"
version: "main"

4
target/executable/bedtools/bedtools_intersect/bedtools_intersect
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@@ -633,9 +633,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect"
LABEL org.opencontainers.image.created="2024-09-19T03:54:07Z"
LABEL org.opencontainers.image.created="2024-09-27T09:55:03Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bedtools/bedtools_links/.config.vsh.yaml
View File

@@ -210,9 +210,9 @@ build_info:
output: "target/executable/bedtools/bedtools_links"
executable: "target/executable/bedtools/bedtools_links/bedtools_links"
viash_version: "0.9.0"
git_commit: "bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
git_remote: "https://x-access-token:ghs_lSKHBbqnO6mkOoPjjavM2ghphcCkFP1NX9Uo@github.com/viash-hub/biobox"
git_tag: "v0.2.0-5-gbc9cc0a"
git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58"
git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox"
git_tag: "v0.2.0-7-g237a2e3"
package_config:
name: "biobox"
version: "main"

4
target/executable/bedtools/bedtools_links/bedtools_links
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@@ -500,9 +500,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links"
LABEL org.opencontainers.image.created="2024-09-19T03:54:07Z"
LABEL org.opencontainers.image.created="2024-09-27T09:55:03Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bedtools/bedtools_merge/.config.vsh.yaml
View File

@@ -279,9 +279,9 @@ build_info:
output: "target/executable/bedtools/bedtools_merge"
executable: "target/executable/bedtools/bedtools_merge/bedtools_merge"
viash_version: "0.9.0"
git_commit: "bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
git_remote: "https://x-access-token:ghs_lSKHBbqnO6mkOoPjjavM2ghphcCkFP1NX9Uo@github.com/viash-hub/biobox"
git_tag: "v0.2.0-5-gbc9cc0a"
git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58"
git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox"
git_tag: "v0.2.0-7-g237a2e3"
package_config:
name: "biobox"
version: "main"

4
target/executable/bedtools/bedtools_merge/bedtools_merge
View File

@@ -558,9 +558,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge"
LABEL org.opencontainers.image.created="2024-09-19T03:54:05Z"
LABEL org.opencontainers.image.created="2024-09-27T09:55:01Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bedtools/bedtools_sort/.config.vsh.yaml
View File

@@ -222,9 +222,9 @@ build_info:
output: "target/executable/bedtools/bedtools_sort"
executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
viash_version: "0.9.0"
git_commit: "bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
git_remote: "https://x-access-token:ghs_lSKHBbqnO6mkOoPjjavM2ghphcCkFP1NX9Uo@github.com/viash-hub/biobox"
git_tag: "v0.2.0-5-gbc9cc0a"
git_commit: "237a2e3a229ee589d1ebbc282526f87398e26f58"
git_remote: "https://x-access-token:ghs_d8HWKccvaGy0CcM6cBJNV2ku91TvFG4KZuEr@github.com/viash-hub/biobox"
git_tag: "v0.2.0-7-g237a2e3"
package_config:
name: "biobox"
version: "main"

4
target/executable/bedtools/bedtools_sort/bedtools_sort
View File

@@ -509,9 +509,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
LABEL org.opencontainers.image.created="2024-09-19T03:54:08Z"
LABEL org.opencontainers.image.created="2024-09-27T09:55:04Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="bc9cc0a6ce4e0b87a4ce47561b4812b449e101ca"
LABEL org.opencontainers.image.revision="237a2e3a229ee589d1ebbc282526f87398e26f58"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER