Build branch main with version main (c733de2)

Build pipeline: viash-hub.biobox.main-lltcw Source commit: c733de2e4c Source message: Bump viash to 0.9.4 (#175) * Bump viash to 0.9.4 * Add CHANGELOG entry * Add PR number
2025-04-30 07:01:27 +00:00
parent 963503eca8
commit af7bcfffa4
376 changed files with 5766 additions and 4468 deletions
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -8,6 +8,8 @@

 * Replace the deprecated use of the meta variable `functionality_name` by just `name` (PR #174).

+* Bump viash to `0.9.4` (PR #175).
+
 # biobox 0.3.0

 ## NEW FUNCTIONALITY
--- a/_viash.yaml
+++ b/_viash.yaml
@@ -7,7 +7,7 @@ links:
  issue_tracker: https://github.com/viash-hub/biobox/issues
  repository: https://github.com/viash-hub/biobox

-viash_version: 0.9.2
+viash_version: 0.9.4

 config_mods: |
  .requirements.commands := ['ps']
--- a/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
@@ -237,16 +237,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/agat/agat_convert_bed2gff"
  executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
+++ b/target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
@@ -2,7 +2,7 @@

 # agat_convert_bed2gff main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t

 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:22Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:47Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
@@ -227,16 +227,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/agat/agat_convert_embl2gff"
  executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
+++ b/target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
@@ -2,7 +2,7 @@

 # agat_convert_embl2gff main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t

 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:23Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:48Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml
@@ -232,16 +232,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/agat/agat_convert_genscan2gff"
  executable: "target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff
+++ b/target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff
@@ -2,7 +2,7 @@

 # agat_convert_genscan2gff main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t

 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_genscan2gff"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:22Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:47Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml
@@ -188,16 +188,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/agat/agat_convert_mfannot2gff"
  executable: "target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff
+++ b/target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff
@@ -2,7 +2,7 @@

 # agat_convert_mfannot2gff main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t

 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_mfannot2gff"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:23Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:47Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
@@ -230,16 +230,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/agat/agat_convert_sp_gff2gtf"
  executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
+++ b/target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
@@ -2,7 +2,7 @@

 # agat_convert_sp_gff2gtf main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t

 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:21Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:46Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
@@ -190,16 +190,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/agat/agat_convert_sp_gff2tsv"
  executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
+++ b/target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
@@ -2,7 +2,7 @@

 # agat_convert_sp_gff2tsv main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t

 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:22Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:46Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
+++ b/target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
@@ -197,16 +197,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/agat/agat_convert_sp_gxf2gxf"
  executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
+++ b/target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
@@ -2,7 +2,7 @@

 # agat_convert_sp_gxf2gxf main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t

 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:24Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:48Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml
+++ b/target/executable/agat/agat_sp_add_introns/.config.vsh.yaml
@@ -188,16 +188,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/agat/agat_sp_add_introns"
  executable: "target/executable/agat/agat_sp_add_introns/agat_sp_add_introns"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns
+++ b/target/executable/agat/agat_sp_add_introns/agat_sp_add_introns
@@ -2,7 +2,7 @@

 # agat_sp_add_introns main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t

 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_add_introns"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:21Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:46Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml
+++ b/target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml
@@ -238,16 +238,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/agat/agat_sp_filter_feature_from_kill_list"
  executable: "target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list
+++ b/target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list
@@ -2,7 +2,7 @@

 # agat_sp_filter_feature_from_kill_list main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t

 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_filter_feature_from_kill_list"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:22Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:47Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml
+++ b/target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml
@@ -186,16 +186,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/agat/agat_sp_merge_annotations"
  executable: "target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations
+++ b/target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations
@@ -2,7 +2,7 @@

 # agat_sp_merge_annotations main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t

 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_merge_annotations"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:23Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:48Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/agat/agat_sp_statistics/.config.vsh.yaml
+++ b/target/executable/agat/agat_sp_statistics/.config.vsh.yaml
@@ -233,16 +233,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/agat/agat_sp_statistics"
  executable: "target/executable/agat/agat_sp_statistics/agat_sp_statistics"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/agat/agat_sp_statistics/agat_sp_statistics
+++ b/target/executable/agat/agat_sp_statistics/agat_sp_statistics
@@ -2,7 +2,7 @@

 # agat_sp_statistics main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/.*v\.//; s/\s.*//' | sed 's/^/AGAT: /' > /var/softwa

 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_statistics"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:23Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:48Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml
+++ b/target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml
@@ -229,16 +229,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/agat/agat_sq_stat_basic"
  executable: "target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic
+++ b/target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic
@@ -2,7 +2,7 @@

 # agat_sq_stat_basic main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t

 LABEL org.opencontainers.image.authors="Leïla Paquay"
 LABEL org.opencontainers.image.description="Companion container for running component agat agat_sq_stat_basic"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:21Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:46Z"
 LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/arriba/.config.vsh.yaml
+++ b/target/executable/arriba/.config.vsh.yaml
@@ -708,16 +708,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/arriba"
  executable: "target/executable/arriba/arriba"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/arriba/arriba
+++ b/target/executable/arriba/arriba
@@ -2,7 +2,7 @@

 # arriba main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN arriba -h | grep 'Version:' 2>&1 |  sed 's/Version:\s\(.*\)/arriba: "\1"/' >

 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component arriba"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:25Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:49Z"
 LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bases2fastq/.config.vsh.yaml
+++ b/target/executable/bases2fastq/.config.vsh.yaml
@@ -396,16 +396,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bases2fastq"
  executable: "target/executable/bases2fastq/bases2fastq"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bases2fastq/bases2fastq
+++ b/target/executable/bases2fastq/bases2fastq
@@ -2,7 +2,7 @@

 # bases2fastq main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bases2fastq: $(bases2fastq --version | cut -d' ' -f3)" > /var/software

 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component bases2fastq"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:21Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:46Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml
+++ b/target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml
@@ -370,16 +370,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bbmap/bbmap_bbsplit"
  executable: "target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit
+++ b/target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit
@@ -2,7 +2,7 @@

 # bbmap_bbsplit main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -454,9 +454,9 @@ cp -r bbmap/* /usr/local/bin
 RUN bbsplit.sh --version 2>&1 | awk '/BBMap version/{print "BBMAP:", $NF}' > /var/software_versions.txt

 LABEL org.opencontainers.image.description="Companion container for running component bbmap bbmap_bbsplit"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:18Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:43Z"
 LABEL org.opencontainers.image.source="https://github.com/BioInfoTools/BBMap/blob/master/sh/bbsplit.sh"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
@@ -471,16 +471,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bcftools/bcftools_annotate"
  executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bcftools/bcftools_annotate/bcftools_annotate
+++ b/target/executable/bcftools/bcftools_annotate/bcftools_annotate
@@ -2,7 +2,7 @@

 # bcftools_annotate main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:17Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:43Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bcftools/bcftools_concat/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_concat/.config.vsh.yaml
@@ -337,16 +337,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bcftools/bcftools_concat"
  executable: "target/executable/bcftools/bcftools_concat/bcftools_concat"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bcftools/bcftools_concat/bcftools_concat
+++ b/target/executable/bcftools/bcftools_concat/bcftools_concat
@@ -2,7 +2,7 @@

 # bcftools_concat main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:17Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:42Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bcftools/bcftools_norm/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_norm/.config.vsh.yaml
@@ -418,16 +418,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bcftools/bcftools_norm"
  executable: "target/executable/bcftools/bcftools_norm/bcftools_norm"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bcftools/bcftools_norm/bcftools_norm
+++ b/target/executable/bcftools/bcftools_norm/bcftools_norm
@@ -2,7 +2,7 @@

 # bcftools_norm main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:16Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:42Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bcftools/bcftools_sort/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_sort/.config.vsh.yaml
@@ -187,16 +187,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bcftools/bcftools_sort"
  executable: "target/executable/bcftools/bcftools_sort/bcftools_sort"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bcftools/bcftools_sort/bcftools_sort
+++ b/target/executable/bcftools/bcftools_sort/bcftools_sort
@@ -2,7 +2,7 @@

 # bcftools_sort main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:17Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:42Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bcftools/bcftools_stats/.config.vsh.yaml
+++ b/target/executable/bcftools/bcftools_stats/.config.vsh.yaml
@@ -460,16 +460,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bcftools/bcftools_stats"
  executable: "target/executable/bcftools/bcftools_stats/bcftools_stats"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bcftools/bcftools_stats/bcftools_stats
+++ b/target/executable/bcftools/bcftools_stats/bcftools_stats
@@ -2,7 +2,7 @@

 # bcftools_stats main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:16Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:42Z"
 LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bcl_convert/.config.vsh.yaml
+++ b/target/executable/bcl_convert/.config.vsh.yaml
@@ -430,16 +430,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bcl_convert"
  executable: "target/executable/bcl_convert/bcl_convert"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bcl_convert/bcl_convert
+++ b/target/executable/bcl_convert/bcl_convert
@@ -2,7 +2,7 @@

 # bcl_convert main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -462,9 +462,9 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/

 LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component bcl_convert"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:18Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:44Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
+++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
@@ -276,16 +276,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference"
  executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
+++ b/target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
@@ -2,7 +2,7 @@

 # bd_rhapsody_make_reference main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -465,9 +465,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1)
 RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:19Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:44Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
+++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
@@ -1117,16 +1117,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis"
  executable: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis
+++ b/target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis
@@ -2,7 +2,7 @@

 # bd_rhapsody_sequence_analysis main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -465,9 +465,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1)
 RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_sequence_analysis"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:19Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:44Z"
 LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml
@@ -237,16 +237,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bedtools/bedtools_bamtobed"
  executable: "target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed
+++ b/target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed
@@ -2,7 +2,7 @@

 # bedtools_bamtobed main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtobed"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:22Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:46Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
@@ -189,16 +189,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bedtools/bedtools_bamtofastq"
  executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
+++ b/target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
@@ -2,7 +2,7 @@

 # bedtools_bamtofastq main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:24Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:49Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
@@ -178,16 +178,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bedtools/bedtools_bed12tobed6"
  executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
+++ b/target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
@@ -2,7 +2,7 @@

 # bedtools_bed12tobed6 main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:24Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:49Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
@@ -216,16 +216,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bedtools/bedtools_bedtobam"
  executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
+++ b/target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
@@ -2,7 +2,7 @@

 # bedtools_bedtobam main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:24Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:49Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml
@@ -339,16 +339,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bedtools/bedtools_genomecov"
  executable: "target/executable/bedtools/bedtools_genomecov/bedtools_genomecov"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov
+++ b/target/executable/bedtools/bedtools_genomecov/bedtools_genomecov
@@ -2,7 +2,7 @@

 # bedtools_genomecov main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_genomecov"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:22Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:47Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
@@ -234,16 +234,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bedtools/bedtools_getfasta"
  executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
+++ b/target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
@@ -2,7 +2,7 @@

 # bedtools_getfasta main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var

 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:22Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:47Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
@@ -275,16 +275,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bedtools/bedtools_groupby"
  executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bedtools/bedtools_groupby/bedtools_groupby
+++ b/target/executable/bedtools/bedtools_groupby/bedtools_groupby
@@ -2,7 +2,7 @@

 # bedtools_groupby main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:23Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:47Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
@@ -412,16 +412,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bedtools/bedtools_intersect"
  executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bedtools/bedtools_intersect/bedtools_intersect
+++ b/target/executable/bedtools/bedtools_intersect/bedtools_intersect
@@ -2,7 +2,7 @@

 # bedtools_intersect main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:23Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:48Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bedtools/bedtools_links/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_links/.config.vsh.yaml
@@ -212,16 +212,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bedtools/bedtools_links"
  executable: "target/executable/bedtools/bedtools_links/bedtools_links"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bedtools/bedtools_links/bedtools_links
+++ b/target/executable/bedtools/bedtools_links/bedtools_links
@@ -2,7 +2,7 @@

 # bedtools_links main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:24Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:48Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bedtools/bedtools_merge/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_merge/.config.vsh.yaml
@@ -281,16 +281,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bedtools/bedtools_merge"
  executable: "target/executable/bedtools/bedtools_merge/bedtools_merge"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bedtools/bedtools_merge/bedtools_merge
+++ b/target/executable/bedtools/bedtools_merge/bedtools_merge
@@ -2,7 +2,7 @@

 # bedtools_merge main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:23Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:48Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/bedtools/bedtools_sort/.config.vsh.yaml
+++ b/target/executable/bedtools/bedtools_sort/.config.vsh.yaml
@@ -224,16 +224,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/bedtools/bedtools_sort"
  executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/bedtools/bedtools_sort/bedtools_sort
+++ b/target/executable/bedtools/bedtools_sort/bedtools_sort
@@ -2,7 +2,7 @@

 # bedtools_sort main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -456,9 +456,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:23Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:47Z"
 LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/busco/busco_download_datasets/.config.vsh.yaml
+++ b/target/executable/busco/busco_download_datasets/.config.vsh.yaml
@@ -160,16 +160,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/busco/busco_download_datasets"
  executable: "target/executable/busco/busco_download_datasets/busco_download_datasets"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/busco/busco_download_datasets/busco_download_datasets
+++ b/target/executable/busco/busco_download_datasets/busco_download_datasets
@@ -2,7 +2,7 @@

 # busco_download_datasets main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:20Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:45Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/busco/busco_list_datasets/.config.vsh.yaml
+++ b/target/executable/busco/busco_list_datasets/.config.vsh.yaml
@@ -147,16 +147,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/busco/busco_list_datasets"
  executable: "target/executable/busco/busco_list_datasets/busco_list_datasets"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/busco/busco_list_datasets/busco_list_datasets
+++ b/target/executable/busco/busco_list_datasets/busco_list_datasets
@@ -2,7 +2,7 @@

 # busco_list_datasets main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:19Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:45Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/busco/busco_run/.config.vsh.yaml
+++ b/target/executable/busco/busco_run/.config.vsh.yaml
@@ -425,16 +425,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/busco/busco_run"
  executable: "target/executable/busco/busco_run/busco_run"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/busco/busco_run/busco_run
+++ b/target/executable/busco/busco_run/busco_run
@@ -2,7 +2,7 @@

 # busco_run main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component busco busco_run"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:20Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:45Z"
 LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml
+++ b/target/executable/cellranger/cellranger_mkref/.config.vsh.yaml
@@ -197,16 +197,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/cellranger/cellranger_mkref"
  executable: "target/executable/cellranger/cellranger_mkref/cellranger_mkref"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/cellranger/cellranger_mkref/cellranger_mkref
+++ b/target/executable/cellranger/cellranger_mkref/cellranger_mkref
@@ -2,7 +2,7 @@

 # cellranger_mkref main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -454,9 +454,9 @@ RUN apt-get update && \

 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component cellranger cellranger_mkref"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:24Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:49Z"
 LABEL org.opencontainers.image.source="https://github.com/10XGenomics/cellranger/blob/main/lib/python/cellranger/reference_builder.py"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/cutadapt/.config.vsh.yaml
+++ b/target/executable/cutadapt/.config.vsh.yaml
@@ -742,16 +742,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/cutadapt"
  executable: "target/executable/cutadapt/cutadapt"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/cutadapt/cutadapt
+++ b/target/executable/cutadapt/cutadapt
@@ -2,7 +2,7 @@

 # cutadapt main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -455,9 +455,9 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions

 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component cutadapt"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:21Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:46Z"
 LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/falco/.config.vsh.yaml
+++ b/target/executable/falco/.config.vsh.yaml
@@ -319,16 +319,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/falco"
  executable: "target/executable/falco/falco"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/falco/falco
+++ b/target/executable/falco/falco
@@ -2,7 +2,7 @@

 # falco main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -464,9 +464,9 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio

 LABEL org.opencontainers.image.authors="Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component falco"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:26Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:51Z"
 LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/fastp/.config.vsh.yaml
+++ b/target/executable/fastp/.config.vsh.yaml
@@ -1085,16 +1085,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/fastp"
  executable: "target/executable/fastp/fastp"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/fastp/fastp
+++ b/target/executable/fastp/fastp
@@ -2,7 +2,7 @@

 # fastp main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt

 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component fastp"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:18Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:43Z"
 LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/fastqc/.config.vsh.yaml
+++ b/target/executable/fastqc/.config.vsh.yaml
@@ -342,16 +342,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/fastqc"
  executable: "target/executable/fastqc/fastqc"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/fastqc/fastqc
+++ b/target/executable/fastqc/fastqc
@@ -2,7 +2,7 @@

 # fastqc main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN echo "fastqc: $(fastqc --version | sed -n 's/^FastQC //p')" > /var/software_

 LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
 LABEL org.opencontainers.image.description="Companion container for running component fastqc"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:27Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:51Z"
 LABEL org.opencontainers.image.source="https://github.com/s-andrews/FastQC"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/featurecounts/.config.vsh.yaml
+++ b/target/executable/featurecounts/.config.vsh.yaml
@@ -647,16 +647,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/featurecounts"
  executable: "target/executable/featurecounts/featurecounts"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/featurecounts/featurecounts
+++ b/target/executable/featurecounts/featurecounts
@@ -2,7 +2,7 @@

 # featurecounts main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/

 LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
 LABEL org.opencontainers.image.description="Companion container for running component featurecounts"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:21Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:46Z"
 LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/fq_subsample/.config.vsh.yaml
+++ b/target/executable/fq_subsample/.config.vsh.yaml
@@ -192,16 +192,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/fq_subsample"
  executable: "target/executable/fq_subsample/fq_subsample"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/fq_subsample/fq_subsample
+++ b/target/executable/fq_subsample/fq_subsample
@@ -2,7 +2,7 @@

 # fq_subsample main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -453,9 +453,9 @@ mv target/release/fq /usr/local/bin/ && \
 cd / && rm -rf /fq

 LABEL org.opencontainers.image.description="Companion container for running component fq_subsample"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:26Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:51Z"
 LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/gffread/.config.vsh.yaml
+++ b/target/executable/gffread/.config.vsh.yaml
@@ -687,16 +687,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/gffread"
  executable: "target/executable/gffread/gffread"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/gffread/gffread
+++ b/target/executable/gffread/gffread
@@ -2,7 +2,7 @@

 # gffread main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt

 LABEL org.opencontainers.image.authors="Emma Rousseau"
 LABEL org.opencontainers.image.description="Companion container for running component gffread"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:18Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:44Z"
 LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/kallisto/kallisto_index/.config.vsh.yaml
+++ b/target/executable/kallisto/kallisto_index/.config.vsh.yaml
@@ -220,16 +220,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/kallisto/kallisto_index"
  executable: "target/executable/kallisto/kallisto_index/kallisto_index"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/kallisto/kallisto_index/kallisto_index
+++ b/target/executable/kallisto/kallisto_index/kallisto_index
@@ -2,7 +2,7 @@

 # kallisto_index main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -452,9 +452,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \
 mv kallisto/kallisto /usr/local/bin/

 LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:25Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:50Z"
 LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml
+++ b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml
@@ -248,16 +248,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/kallisto/kallisto_quant"
  executable: "target/executable/kallisto/kallisto_quant/kallisto_quant"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/kallisto/kallisto_quant/kallisto_quant
+++ b/target/executable/kallisto/kallisto_quant/kallisto_quant
@@ -2,7 +2,7 @@

 # kallisto_quant main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -454,9 +454,9 @@ mv kallisto/kallisto /usr/local/bin/
 RUN echo "kallisto: $(kallisto version | sed 's/kallisto, version //')" > /var/software_versions.txt

 LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:25Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:50Z"
 LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/lofreq/lofreq_call/.config.vsh.yaml
+++ b/target/executable/lofreq/lofreq_call/.config.vsh.yaml
@@ -509,16 +509,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/lofreq/lofreq_call"
  executable: "target/executable/lofreq/lofreq_call/lofreq_call"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/lofreq/lofreq_call/lofreq_call
+++ b/target/executable/lofreq/lofreq_call/lofreq_call
@@ -2,7 +2,7 @@

 # lofreq_call main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -453,9 +453,9 @@ echo "lofreq: $version" > /var/software_versions.txt

 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:20Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:45Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
+++ b/target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
@@ -217,16 +217,16 @@ build_info:
  engine: "docker|native"
  output: "target/executable/lofreq/lofreq_indelqual"
  executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
-  viash_version: "0.9.2"
-  git_commit: "1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+  viash_version: "0.9.4"
+  git_commit: "c733de2e4cc21eccb241060f82bce0b332f79d81"
  git_remote: "https://github.com/viash-hub/biobox"
-  git_tag: "v0.2.0-31-g1efc026"
+  git_tag: "v0.2.0-32-gc733de2"
 package_config:
  name: "biobox"
  version: "main"
  description: "A collection of bioinformatics tools for working with sequence data.\n"
  info: null
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
  source: "src"
  target: "target"
  config_mods:
--- a/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
+++ b/target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
@@ -2,7 +2,7 @@

 # lofreq_indelqual main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -453,9 +453,9 @@ echo "lofreq: $version" > /var/software_versions.txt

 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
-LABEL org.opencontainers.image.created="2025-04-22T08:55:19Z"
+LABEL org.opencontainers.image.created="2025-04-29T10:54:45Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
-LABEL org.opencontainers.image.revision="1efc0264ca674d8cff7729fcd0ad8f11ea06ee27"
+LABEL org.opencontainers.image.revision="c733de2e4cc21eccb241060f82bce0b332f79d81"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/Show More
+++ b/Show More