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Build branch main with version main (06005a7)

Browse Source 
Build pipeline: viash-hub.biobox.main-s2mvx

Source commit: 06005a79b4

Source message: Add agat convert mfannot2gff (#112)

* add help

* add config

* add run script

* add test data and expected output + script to fetch them

* add test

* update changelog

* cleanup

* create temporary directory and clean up on exit

* add requirements

* update keywords

* update --config description

* add set -eo pipefail to script and test files

* fxi create temporary directory

* cleanup changelog

* cleanup changelog

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
This commit is contained in:
CI
2024-11-02 09:53:24 +00:00
parent a7b0d33a32
commit c71aa10adc
331 changed files with 16555 additions and 837 deletions
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6
target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml
View File

@@ -359,9 +359,9 @@ build_info:
output: "target/executable/bbmap/bbmap_bbsplit"
executable: "target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit"
viash_version: "0.9.0"
git_commit: "aa43543e1fb609901d09b7a9f0c5e72707cb47a4"
git_remote: "https://x-access-token:ghs_9v4VhFt3rgNHA8iZY5HYB5rN6bmxTd2UtBuO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-20-gaa43543"
git_commit: "06005a79b49911f1197ccfddf066fc566d5b1def"
git_remote: "https://x-access-token:ghs_s2VchCFPnGFkJ2bOWXBcoeam5dPxgi4UR0W2@github.com/viash-hub/biobox"
git_tag: "v0.2.0-22-g06005a7"
package_config:
name: "biobox"
version: "main"

4
target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit
View File

@@ -600,9 +600,9 @@ cp -r bbmap/* /usr/local/bin
RUN bbsplit.sh --version 2>&1 | awk '/BBMap version/{print "BBMAP:", $NF}' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component bbmap bbmap_bbsplit"
LABEL org.opencontainers.image.created="2024-10-26T18:44:12Z"
LABEL org.opencontainers.image.created="2024-11-02T09:32:13Z"
LABEL org.opencontainers.image.source="https://github.com/BioInfoTools/BBMap/blob/master/sh/bbsplit.sh"
LABEL org.opencontainers.image.revision="aa43543e1fb609901d09b7a9f0c5e72707cb47a4"
LABEL org.opencontainers.image.revision="06005a79b49911f1197ccfddf066fc566d5b1def"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER