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Build branch main with version main (06005a7)

Browse Source 
Build pipeline: viash-hub.biobox.main-s2mvx

Source commit: 06005a79b4

Source message: Add agat convert mfannot2gff (#112)

* add help

* add config

* add run script

* add test data and expected output + script to fetch them

* add test

* update changelog

* cleanup

* create temporary directory and clean up on exit

* add requirements

* update keywords

* update --config description

* add set -eo pipefail to script and test files

* fxi create temporary directory

* cleanup changelog

* cleanup changelog

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
This commit is contained in:
CI
2024-11-02 09:53:24 +00:00
parent a7b0d33a32
commit c71aa10adc
331 changed files with 16555 additions and 837 deletions
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6
target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
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@@ -469,9 +469,9 @@ build_info:
output: "target/executable/bcftools/bcftools_annotate"
executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate"
viash_version: "0.9.0"
git_commit: "aa43543e1fb609901d09b7a9f0c5e72707cb47a4"
git_remote: "https://x-access-token:ghs_9v4VhFt3rgNHA8iZY5HYB5rN6bmxTd2UtBuO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-20-gaa43543"
git_commit: "06005a79b49911f1197ccfddf066fc566d5b1def"
git_remote: "https://x-access-token:ghs_s2VchCFPnGFkJ2bOWXBcoeam5dPxgi4UR0W2@github.com/viash-hub/biobox"
git_tag: "v0.2.0-22-g06005a7"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_annotate/bcftools_annotate
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@@ -650,9 +650,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate"
LABEL org.opencontainers.image.created="2024-10-26T18:44:00Z"
LABEL org.opencontainers.image.created="2024-11-02T09:32:22Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="aa43543e1fb609901d09b7a9f0c5e72707cb47a4"
LABEL org.opencontainers.image.revision="06005a79b49911f1197ccfddf066fc566d5b1def"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bcftools/bcftools_concat/.config.vsh.yaml
View File

@@ -335,9 +335,9 @@ build_info:
output: "target/executable/bcftools/bcftools_concat"
executable: "target/executable/bcftools/bcftools_concat/bcftools_concat"
viash_version: "0.9.0"
git_commit: "aa43543e1fb609901d09b7a9f0c5e72707cb47a4"
git_remote: "https://x-access-token:ghs_9v4VhFt3rgNHA8iZY5HYB5rN6bmxTd2UtBuO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-20-gaa43543"
git_commit: "06005a79b49911f1197ccfddf066fc566d5b1def"
git_remote: "https://x-access-token:ghs_s2VchCFPnGFkJ2bOWXBcoeam5dPxgi4UR0W2@github.com/viash-hub/biobox"
git_tag: "v0.2.0-22-g06005a7"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_concat/bcftools_concat
View File

@@ -566,9 +566,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat"
LABEL org.opencontainers.image.created="2024-10-26T18:44:01Z"
LABEL org.opencontainers.image.created="2024-11-02T09:32:21Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="aa43543e1fb609901d09b7a9f0c5e72707cb47a4"
LABEL org.opencontainers.image.revision="06005a79b49911f1197ccfddf066fc566d5b1def"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bcftools/bcftools_norm/.config.vsh.yaml
View File

@@ -416,9 +416,9 @@ build_info:
output: "target/executable/bcftools/bcftools_norm"
executable: "target/executable/bcftools/bcftools_norm/bcftools_norm"
viash_version: "0.9.0"
git_commit: "aa43543e1fb609901d09b7a9f0c5e72707cb47a4"
git_remote: "https://x-access-token:ghs_9v4VhFt3rgNHA8iZY5HYB5rN6bmxTd2UtBuO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-20-gaa43543"
git_commit: "06005a79b49911f1197ccfddf066fc566d5b1def"
git_remote: "https://x-access-token:ghs_s2VchCFPnGFkJ2bOWXBcoeam5dPxgi4UR0W2@github.com/viash-hub/biobox"
git_tag: "v0.2.0-22-g06005a7"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_norm/bcftools_norm
View File

@@ -589,9 +589,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm"
LABEL org.opencontainers.image.created="2024-10-26T18:44:02Z"
LABEL org.opencontainers.image.created="2024-11-02T09:32:21Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="aa43543e1fb609901d09b7a9f0c5e72707cb47a4"
LABEL org.opencontainers.image.revision="06005a79b49911f1197ccfddf066fc566d5b1def"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bcftools/bcftools_sort/.config.vsh.yaml
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@@ -185,9 +185,9 @@ build_info:
output: "target/executable/bcftools/bcftools_sort"
executable: "target/executable/bcftools/bcftools_sort/bcftools_sort"
viash_version: "0.9.0"
git_commit: "aa43543e1fb609901d09b7a9f0c5e72707cb47a4"
git_remote: "https://x-access-token:ghs_9v4VhFt3rgNHA8iZY5HYB5rN6bmxTd2UtBuO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-20-gaa43543"
git_commit: "06005a79b49911f1197ccfddf066fc566d5b1def"
git_remote: "https://x-access-token:ghs_s2VchCFPnGFkJ2bOWXBcoeam5dPxgi4UR0W2@github.com/viash-hub/biobox"
git_tag: "v0.2.0-22-g06005a7"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_sort/bcftools_sort
View File

@@ -483,9 +483,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort"
LABEL org.opencontainers.image.created="2024-10-26T18:44:02Z"
LABEL org.opencontainers.image.created="2024-11-02T09:32:20Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="aa43543e1fb609901d09b7a9f0c5e72707cb47a4"
LABEL org.opencontainers.image.revision="06005a79b49911f1197ccfddf066fc566d5b1def"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/bcftools/bcftools_stats/.config.vsh.yaml
View File

@@ -458,9 +458,9 @@ build_info:
output: "target/executable/bcftools/bcftools_stats"
executable: "target/executable/bcftools/bcftools_stats/bcftools_stats"
viash_version: "0.9.0"
git_commit: "aa43543e1fb609901d09b7a9f0c5e72707cb47a4"
git_remote: "https://x-access-token:ghs_9v4VhFt3rgNHA8iZY5HYB5rN6bmxTd2UtBuO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-20-gaa43543"
git_commit: "06005a79b49911f1197ccfddf066fc566d5b1def"
git_remote: "https://x-access-token:ghs_s2VchCFPnGFkJ2bOWXBcoeam5dPxgi4UR0W2@github.com/viash-hub/biobox"
git_tag: "v0.2.0-22-g06005a7"
package_config:
name: "biobox"
version: "main"

4
target/executable/bcftools/bcftools_stats/bcftools_stats
View File

@@ -626,9 +626,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats"
LABEL org.opencontainers.image.created="2024-10-26T18:44:01Z"
LABEL org.opencontainers.image.created="2024-11-02T09:32:21Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="aa43543e1fb609901d09b7a9f0c5e72707cb47a4"
LABEL org.opencontainers.image.revision="06005a79b49911f1197ccfddf066fc566d5b1def"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER