vsh/biobox
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Build branch main with version main (e6627ec)

Browse Source 
Build pipeline: viash-hub.biobox.main-v4lxs

Source commit: e6627ec728

Source message: FastQC (#92)

* Starting Component

* Creating Files

* update on config file

* Update on test.sh

* Update on config

* Update script.sh

* Update on script.sh

* trying to figure multiple: true

* Update on script.sh

* Update on script

* Adding some tests

* More tests

* Update on script.sh

* Added more tests

* Small Changes

* Update test.sh

* Update on Script and Test

- change the --zip and --html to take wild card '*'

* Added one more test

* Removed test_data dir

* More description

* Update CHANGELOG.md

* Update on config and script

- meta_cpus
- meta_tmp_dir

* Bug Fixed

* unset_if_false

* Updating Tests

* Update script.sh

* debugging

* Minor changes

* Update config.vsh.yaml

* Update config.vsh.yaml

* Required Changes

- large changes on script.sh

* Update config.vsh.yaml

* Adding extra links

* tmpdir bug

* Updating tests

* minor changes

* Adding extra output options

--summary
--data

* minor change

* Update script.sh

* small change in config
This commit is contained in:
CI
2024-09-03 09:13:58 +00:00
parent f066ef0ffa
commit ddad38b4a3
211 changed files with 7517 additions and 250 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
target/executable/busco/busco_download_datasets/.config.vsh.yaml
View File

@@ -158,7 +158,7 @@ build_info:
output: "target/executable/busco/busco_download_datasets"
executable: "target/executable/busco/busco_download_datasets/busco_download_datasets"
viash_version: "0.9.0-RC7"
git_commit: "da3272d0118227ee788cd93b222201f557729397"
git_commit: "e6627ec728761fe63fe75b0a10ba51da2bccec21"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/busco/busco_download_datasets/busco_download_datasets
View File

@@ -475,9 +475,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets"
LABEL org.opencontainers.image.created="2024-09-02T13:28:17Z"
LABEL org.opencontainers.image.created="2024-09-03T08:58:43Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="da3272d0118227ee788cd93b222201f557729397"
LABEL org.opencontainers.image.revision="e6627ec728761fe63fe75b0a10ba51da2bccec21"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/busco/busco_list_datasets/.config.vsh.yaml
View File

@@ -145,7 +145,7 @@ build_info:
output: "target/executable/busco/busco_list_datasets"
executable: "target/executable/busco/busco_list_datasets/busco_list_datasets"
viash_version: "0.9.0-RC7"
git_commit: "da3272d0118227ee788cd93b222201f557729397"
git_commit: "e6627ec728761fe63fe75b0a10ba51da2bccec21"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/busco/busco_list_datasets/busco_list_datasets
View File

@@ -465,9 +465,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets"
LABEL org.opencontainers.image.created="2024-09-02T13:28:18Z"
LABEL org.opencontainers.image.created="2024-09-03T08:58:43Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="da3272d0118227ee788cd93b222201f557729397"
LABEL org.opencontainers.image.revision="e6627ec728761fe63fe75b0a10ba51da2bccec21"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/busco/busco_run/.config.vsh.yaml
View File

@@ -423,7 +423,7 @@ build_info:
output: "target/executable/busco/busco_run"
executable: "target/executable/busco/busco_run/busco_run"
viash_version: "0.9.0-RC7"
git_commit: "da3272d0118227ee788cd93b222201f557729397"
git_commit: "e6627ec728761fe63fe75b0a10ba51da2bccec21"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/busco/busco_run/busco_run
View File

@@ -632,9 +632,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component busco busco_run"
LABEL org.opencontainers.image.created="2024-09-02T13:28:18Z"
LABEL org.opencontainers.image.created="2024-09-03T08:58:43Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="da3272d0118227ee788cd93b222201f557729397"
LABEL org.opencontainers.image.revision="e6627ec728761fe63fe75b0a10ba51da2bccec21"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER