CI
ddad38b4a3
Build pipeline: viash-hub.biobox.main-v4lxs
Source commit: e6627ec728
Source message: FastQC (#92)
* Starting Component
* Creating Files
* update on config file
* Update on test.sh
* Update on config
* Update script.sh
* Update on script.sh
* trying to figure multiple: true
* Update on script.sh
* Update on script
* Adding some tests
* More tests
* Update on script.sh
* Added more tests
* Small Changes
* Update test.sh
* Update on Script and Test
- change the --zip and --html to take wild card '*'
* Added one more test
* Removed test_data dir
* More description
* Update CHANGELOG.md
* Update on config and script
- meta_cpus
- meta_tmp_dir
* Bug Fixed
* unset_if_false
* Updating Tests
* Update script.sh
* debugging
* Minor changes
* Update config.vsh.yaml
* Update config.vsh.yaml
* Required Changes
- large changes on script.sh
* Update config.vsh.yaml
* Adding extra links
* tmpdir bug
* Updating tests
* minor changes
* Adding extra output options
--summary
--data
* minor change
* Update script.sh
* small change in config
🌱📦 biobox
A collection of bioinformatics tools for working with sequence data.
Objectives
- Reusability: Facilitating the use of components across various projects and contexts.
- Reproducibility: Ensuring that components are reproducible and can be easily shared.
- Best Practices: Adhering to established standards in software development and bioinformatics.
Contributing
We encourage contributions from the community. To contribute:
- Fork the Repository: Start by forking this repository to your account.
- Develop Your Component: Create your Viash component, ensuring it aligns with our best practices (detailed below).
- Submit a Pull Request: After testing your component, submit a pull request for review.
Contribution Guidelines
The contribution guidelines describes which steps you should follow to contribute a component to this repository.
- Find a component to contribute
- Add config template
- Fill in the metadata
- Find a suitable container
- Create help file
- Create or fetch test data
- Add arguments for the input files
- Add arguments for the output files
- Add arguments for the other arguments
- Add a Docker engine
- Write a runner script
- Create test script
- Create a
/var/software_versions.txtfile
See the CONTRIBUTING file for more details.
Support and Community
For support, questions, or to join our community:
- Issues: Submit questions or issues via the GitHub issue tracker.
- Discussions: Join our discussions via GitHub Discussions.
License
This repository is licensed under an MIT license. See the LICENSE file for details.