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Build branch qualimap with version qualimap (e6420cd)

Browse Source 
Build pipeline: viash-hub.biobox.qualimap-hcs27

Source commit: e6420cd80f

Source message: update unit tests
This commit is contained in:
CI
2024-07-29 14:59:23 +00:00
parent 1e77c47f20
commit fbfdc19532
125 changed files with 209 additions and 171 deletions
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70
src/qualimap/qualimap_rnaseq/test.sh Normal file → Executable file
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@@ -1,5 +1,22 @@
set -e
#############################################
# helper functions
assert_file_exists() {
[ -f "$1" ] || { echo "File '$1' does not exist" && exit 1; }
}
assert_file_doesnt_exist() {
[ ! -f "$1" ] || { echo "File '$1' exists but shouldn't" && exit 1; }
}
assert_file_not_empty() {
[ -s "$1" ] || { echo "File '$1' is empty but shouldn't be" && exit 1; }
}
assert_file_contains() {
grep -q "$2" "$1" || { echo "File '$1' does not contain '$2'" && exit 1; }
}
#############################################
test_dir="$meta_resources_dir/test_data"
mkdir "run_qualimap_rnaseq_html"
@@ -15,14 +32,33 @@ echo "> Running qualimap with html output report"
--output output.txt
echo ">> Checking output"
[ ! -f "report.html" ] && echo "report.html does not exist" && exit 1
[ ! -f "counts.txt" ] && echo "counts.txt does not exist" && exit 1
[ ! -f "output.txt" ] && echo "output.txt does not exist" && exit 1
assert_file_exists "report.html"
assert_file_exists "counts.txt"
assert_file_exists "output.txt"
assert_file_doesnt_exist "report.pdf"
echo ">> Checking if output is empty"
[ ! -s "report.html" ] && echo "report.html is empty" && exit 1
[ ! -s "counts.txt" ] && echo "counts.txt is empty" && exit 1
[ ! -s "output.txt" ] && echo "output.txt is empty" && exit 1
assert_file_not_empty "report.html"
assert_file_not_empty "counts.txt"
assert_file_not_empty "output.txt"
echo ">> Checking output contents"
assert_file_contains "output.txt" ">>>>>>> Input"
assert_file_contains "output.txt" ">>>>>>> Reads alignment"
assert_file_contains "output.txt" ">>>>>>> Reads genomic origin"
assert_file_contains "output.txt" ">>>>>>> Transcript coverage profile"
assert_file_contains "output.txt" ">>>>>>> Junction analysis"
assert_file_contains "output.txt" ">>>>>>> Transcript coverage profile"
assert_file_contains "counts.txt" "ENSG00000125841.12"
assert_file_contains "report.html" "<title>Qualimap report: RNA Seq QC</title>"
assert_file_contains "report.html" "<h3>Input</h3>"
assert_file_contains "report.html" "<h3>Reads alignment</h3>"
assert_file_contains "report.html" "<h3>Reads genomic origin</h3>"
assert_file_contains "report.html" "<h3>Transcript coverage profile</h3>"
assert_file_contains "report.html" "<h3>Junction analysis</h3>"
cd ..
rm -r run_qualimap_rnaseq_html
@@ -40,14 +76,15 @@ echo "> Running qualimap with pdf output report"
--output output.txt
echo ">> Checking output"
[ ! -f "report.pdf" ] && echo "report.pdf does not exist" && exit 1
[ ! -f "counts.txt" ] && echo "counts.txt does not exist" && exit 1
[ ! -f "output.txt" ] && echo "output.txt does not exist" && exit 1
assert_file_exists "report.pdf"
assert_file_exists "counts.txt"
assert_file_exists "output.txt"
assert_file_doesnt_exist "report.html"
echo ">> Checking if output is empty"
[ ! -s "report.pdf" ] && echo "report.pdf is empty" && exit 1
[ ! -s "counts.txt" ] && echo "counts.txt is empty" && exit 1
[ ! -s "output.txt" ] && echo "output.txt is empty" && exit 1
assert_file_not_empty "report.pdf"
assert_file_not_empty "counts.txt"
assert_file_not_empty "output.txt"
cd ..
rm -r run_qualimap_rnaseq_pdf
@@ -63,12 +100,13 @@ echo "> Running qualimap without report and counts output"
--output output.txt
echo ">> Checking output"
[ -f "report.pdf" ] && echo "report.pdf exists" && exit 1
[ -f "counts.txt" ] && echo "counts.txt exists" && exit 1
[ ! -f "output.txt" ] && echo "output.txt does not exist" && exit 1
assert_file_doesnt_exist "report.pdf"
assert_file_doesnt_exist "report.html"
assert_file_doesnt_exist "counts.txt"
assert_file_exists "output.txt"
echo ">> Checking if output is empty"
[ ! -s "output.txt" ] && echo "output.txt is empty" && exit 1
assert_file_not_empty "output.txt"
cd ..
rm -r run_qualimap_rnaseq

2
target/executable/arriba/.config.vsh.yaml
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@@ -688,7 +688,7 @@ build_info:
output: "target/executable/arriba"
executable: "target/executable/arriba/arriba"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/arriba/arriba
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@@ -749,9 +749,9 @@ ENTRYPOINT []
RUN arriba -h | grep 'Version:' 2>&1 | sed 's/Version:\s\(.*\)/arriba: "\1"/' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component arriba"
LABEL org.opencontainers.image.created="2024-07-29T13:33:51Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:19Z"
LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/bcl_convert/.config.vsh.yaml
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@@ -386,7 +386,7 @@ build_info:
output: "target/executable/bcl_convert"
executable: "target/executable/bcl_convert/bcl_convert"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bcl_convert/bcl_convert
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@@ -593,9 +593,9 @@ rm /tmp/bcl-convert.rpm
RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/^bcl-convert\ Version //p')\"" > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component bcl_convert"
LABEL org.opencontainers.image.created="2024-07-29T13:33:52Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:19Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
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@@ -217,7 +217,7 @@ build_info:
output: "target/executable/bedtools/bedtools_getfasta"
executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
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@@ -521,9 +521,9 @@ RUN apt-get update && \
RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
LABEL org.opencontainers.image.created="2024-07-29T13:33:53Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:21Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/busco/busco_download_datasets/.config.vsh.yaml
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@@ -144,7 +144,7 @@ build_info:
output: "target/executable/busco/busco_download_datasets"
executable: "target/executable/busco/busco_download_datasets/busco_download_datasets"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/busco/busco_download_datasets/busco_download_datasets
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@@ -470,9 +470,9 @@ ENTRYPOINT []
RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets"
LABEL org.opencontainers.image.created="2024-07-29T13:33:50Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:17Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/busco/busco_list_datasets/.config.vsh.yaml
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@@ -131,7 +131,7 @@ build_info:
output: "target/executable/busco/busco_list_datasets"
executable: "target/executable/busco/busco_list_datasets/busco_list_datasets"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/busco/busco_list_datasets/busco_list_datasets
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@@ -460,9 +460,9 @@ ENTRYPOINT []
RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets"
LABEL org.opencontainers.image.created="2024-07-29T13:33:50Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:18Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/busco/busco_run/.config.vsh.yaml
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@@ -409,7 +409,7 @@ build_info:
output: "target/executable/busco/busco_run"
executable: "target/executable/busco/busco_run/busco_run"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/busco/busco_run/busco_run
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@@ -627,9 +627,9 @@ ENTRYPOINT []
RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component busco busco_run"
LABEL org.opencontainers.image.created="2024-07-29T13:33:51Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:18Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/cutadapt/.config.vsh.yaml
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@@ -727,7 +727,7 @@ build_info:
output: "target/executable/cutadapt"
executable: "target/executable/cutadapt/cutadapt"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/cutadapt/cutadapt
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@@ -826,9 +826,9 @@ RUN pip install --upgrade pip && \
RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component cutadapt"
LABEL org.opencontainers.image.created="2024-07-29T13:33:48Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:16Z"
LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/falco/.config.vsh.yaml
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@@ -304,7 +304,7 @@ build_info:
output: "target/executable/falco"
executable: "target/executable/falco/falco"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/falco/falco
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@@ -584,9 +584,9 @@ make install
RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component falco"
LABEL org.opencontainers.image.created="2024-07-29T13:33:49Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:16Z"
LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/fastp/.config.vsh.yaml
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@@ -1065,7 +1065,7 @@ build_info:
output: "target/executable/fastp"
executable: "target/executable/fastp/fastp"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/fastp/fastp
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@@ -1023,9 +1023,9 @@ ENTRYPOINT []
RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component fastp"
LABEL org.opencontainers.image.created="2024-07-29T13:33:54Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:21Z"
LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/featurecounts/.config.vsh.yaml
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@@ -631,7 +631,7 @@ build_info:
output: "target/executable/featurecounts"
executable: "target/executable/featurecounts/featurecounts"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/featurecounts/featurecounts
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@@ -749,9 +749,9 @@ ENTRYPOINT []
RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component featurecounts"
LABEL org.opencontainers.image.created="2024-07-29T13:33:51Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:18Z"
LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/gffread/.config.vsh.yaml
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@@ -671,7 +671,7 @@ build_info:
output: "target/executable/gffread"
executable: "target/executable/gffread/gffread"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/gffread/gffread
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@@ -802,9 +802,9 @@ ENTRYPOINT []
RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component gffread"
LABEL org.opencontainers.image.created="2024-07-29T13:33:49Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:17Z"
LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/lofreq/lofreq_call/.config.vsh.yaml
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@@ -489,7 +489,7 @@ build_info:
output: "target/executable/lofreq/lofreq_call"
executable: "target/executable/lofreq/lofreq_call/lofreq_call"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/lofreq/lofreq_call/lofreq_call
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@@ -651,9 +651,9 @@ RUN version=$(lofreq version | grep 'version' | sed 's/version: //') && \
echo "lofreq: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
LABEL org.opencontainers.image.created="2024-07-29T13:33:56Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:23Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
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@@ -197,7 +197,7 @@ build_info:
output: "target/executable/lofreq/lofreq_indelqual"
executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
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@@ -496,9 +496,9 @@ RUN version=$(lofreq version | grep 'version' | sed 's/version: //') && \
echo "lofreq: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
LABEL org.opencontainers.image.created="2024-07-29T13:33:56Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:24Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/multiqc/.config.vsh.yaml
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@@ -442,7 +442,7 @@ build_info:
output: "target/executable/multiqc"
executable: "target/executable/multiqc/multiqc"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/multiqc/multiqc
View File

@@ -632,9 +632,9 @@ ENTRYPOINT []
RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component multiqc"
LABEL org.opencontainers.image.created="2024-07-29T13:33:52Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:19Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/pear/.config.vsh.yaml
View File

@@ -380,7 +380,7 @@ build_info:
output: "target/executable/pear"
executable: "target/executable/pear/pear"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/pear/pear
View File

@@ -592,9 +592,9 @@ RUN version=$(pear -h | grep 'PEAR v' | sed 's/PEAR v//' | sed 's/ .*//') && \
echo "pear: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component pear"
LABEL org.opencontainers.image.created="2024-07-29T13:33:55Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:23Z"
LABEL org.opencontainers.image.source="https://github.com/tseemann/PEAR"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/qualimap/.config.vsh.yaml
View File

@@ -272,7 +272,7 @@ build_info:
output: "target/executable/qualimap"
executable: "target/executable/qualimap/qualimap"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/qualimap/qualimap
View File

@@ -542,9 +542,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
Rscript -e 'remotes::install_cran(c("optparse"), repos = "https://cran.rstudio.com")'
LABEL org.opencontainers.image.description="Companion container for running component qualimap"
LABEL org.opencontainers.image.created="2024-07-29T13:33:56Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:24Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/salmon/salmon_index/.config.vsh.yaml
View File

@@ -263,7 +263,7 @@ build_info:
output: "target/executable/salmon/salmon_index"
executable: "target/executable/salmon/salmon_index/salmon_index"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/salmon/salmon_index/salmon_index
View File

@@ -541,9 +541,9 @@ ENTRYPOINT []
RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_index"
LABEL org.opencontainers.image.created="2024-07-29T13:33:52Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:20Z"
LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/salmon/salmon_quant/.config.vsh.yaml
View File

@@ -1159,7 +1159,7 @@ build_info:
output: "target/executable/salmon/salmon_quant"
executable: "target/executable/salmon/salmon_quant/salmon_quant"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/salmon/salmon_quant/salmon_quant
View File

@@ -1163,9 +1163,9 @@ ENTRYPOINT []
RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_quant"
LABEL org.opencontainers.image.created="2024-07-29T13:33:53Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:20Z"
LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_collate/.config.vsh.yaml
View File

@@ -250,7 +250,7 @@ build_info:
output: "target/executable/samtools/samtools_collate"
executable: "target/executable/samtools/samtools_collate/samtools_collate"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_collate/samtools_collate
View File

@@ -514,9 +514,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_collate"
LABEL org.opencontainers.image.created="2024-07-29T13:33:58Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:26Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_faidx/.config.vsh.yaml
View File

@@ -229,7 +229,7 @@ build_info:
output: "target/executable/samtools/samtools_faidx"
executable: "target/executable/samtools/samtools_faidx/samtools_faidx"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_faidx/samtools_faidx
View File

@@ -507,9 +507,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_faidx"
LABEL org.opencontainers.image.created="2024-07-29T13:33:59Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:27Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_fasta/.config.vsh.yaml
View File

@@ -419,7 +419,7 @@ build_info:
output: "target/executable/samtools/samtools_fasta"
executable: "target/executable/samtools/samtools_fasta/samtools_fasta"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_fasta/samtools_fasta
View File

@@ -620,9 +620,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fasta"
LABEL org.opencontainers.image.created="2024-07-29T13:33:57Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:25Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_fastq/.config.vsh.yaml
View File

@@ -419,7 +419,7 @@ build_info:
output: "target/executable/samtools/samtools_fastq"
executable: "target/executable/samtools/samtools_fastq/samtools_fastq"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_fastq/samtools_fastq
View File

@@ -621,9 +621,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fastq"
LABEL org.opencontainers.image.created="2024-07-29T13:34:00Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:27Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_flagstat/.config.vsh.yaml
View File

@@ -159,7 +159,7 @@ build_info:
output: "target/executable/samtools/samtools_flagstat"
executable: "target/executable/samtools/samtools_flagstat/samtools_flagstat"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_flagstat/samtools_flagstat
View File

@@ -469,9 +469,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_flagstat"
LABEL org.opencontainers.image.created="2024-07-29T13:33:58Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:25Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_idxstats/.config.vsh.yaml
View File

@@ -169,7 +169,7 @@ build_info:
output: "target/executable/samtools/samtools_idxstats"
executable: "target/executable/samtools/samtools_idxstats/samtools_idxstats"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_idxstats/samtools_idxstats
View File

@@ -473,9 +473,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_idxstats"
LABEL org.opencontainers.image.created="2024-07-29T13:33:58Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:26Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_index/.config.vsh.yaml
View File

@@ -175,7 +175,7 @@ build_info:
output: "target/executable/samtools/samtools_index"
executable: "target/executable/samtools/samtools_index/samtools_index"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_index/samtools_index
View File

@@ -480,9 +480,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_index"
LABEL org.opencontainers.image.created="2024-07-29T13:33:59Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:26Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_sort/.config.vsh.yaml
View File

@@ -318,7 +318,7 @@ build_info:
output: "target/executable/samtools/samtools_sort"
executable: "target/executable/samtools/samtools_sort/samtools_sort"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_sort/samtools_sort
View File

@@ -551,9 +551,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_sort"
LABEL org.opencontainers.image.created="2024-07-29T13:33:59Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:27Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_stats/.config.vsh.yaml
View File

@@ -380,7 +380,7 @@ build_info:
output: "target/executable/samtools/samtools_stats"
executable: "target/executable/samtools/samtools_stats/samtools_stats"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_stats/samtools_stats
View File

@@ -568,9 +568,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_stats"
LABEL org.opencontainers.image.created="2024-07-29T13:33:58Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:26Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_view/.config.vsh.yaml
View File

@@ -651,7 +651,7 @@ build_info:
output: "target/executable/samtools/samtools_view"
executable: "target/executable/samtools/samtools_view/samtools_view"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_view/samtools_view
View File

@@ -820,9 +820,9 @@ RUN samtools --version 2>&1 | grep -E '^(samtools|Using htslib)' | \
sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_view"
LABEL org.opencontainers.image.created="2024-07-29T13:33:57Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:24Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/star/star_align_reads/.config.vsh.yaml
View File

@@ -2108,7 +2108,7 @@ build_info:
output: "target/executable/star/star_align_reads"
executable: "target/executable/star/star_align_reads/star_align_reads"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/star/star_align_reads/star_align_reads
View File

@@ -1665,9 +1665,9 @@ RUN apt-get update && \
RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component star star_align_reads"
LABEL org.opencontainers.image.created="2024-07-29T13:33:55Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:22Z"
LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/star/star_genome_generate/.config.vsh.yaml
View File

@@ -319,7 +319,7 @@ build_info:
output: "target/executable/star/star_genome_generate"
executable: "target/executable/star/star_genome_generate/star_genome_generate"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/star/star_genome_generate/star_genome_generate
View File

@@ -572,9 +572,9 @@ RUN apt-get update && \
RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component star star_genome_generate"
LABEL org.opencontainers.image.created="2024-07-29T13:33:54Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:22Z"
LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml
View File

@@ -597,7 +597,7 @@ build_info:
output: "target/executable/umi_tools/umi_tools_dedup"
executable: "target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup
View File

@@ -765,9 +765,9 @@ ENTRYPOINT []
RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_dedup"
LABEL org.opencontainers.image.created="2024-07-29T13:34:00Z"
LABEL org.opencontainers.image.created="2024-07-29T14:42:28Z"
LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools"
LABEL org.opencontainers.image.revision="58d7dacfc28af316aebc8f11c3facc6c9671e94b"
LABEL org.opencontainers.image.revision="e6420cd80f226128b7223ff79ce1297f99993657"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/nextflow/arriba/.config.vsh.yaml
View File

@@ -688,7 +688,7 @@ build_info:
output: "target/nextflow/arriba"
executable: "target/nextflow/arriba/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/arriba/main.nf
View File

@@ -3534,7 +3534,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/arriba",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/bcl_convert/.config.vsh.yaml
View File

@@ -386,7 +386,7 @@ build_info:
output: "target/nextflow/bcl_convert"
executable: "target/nextflow/bcl_convert/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/bcl_convert/main.nf
View File

@@ -3249,7 +3249,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/bcl_convert",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/bedtools/bedtools_getfasta/.config.vsh.yaml
View File

@@ -217,7 +217,7 @@ build_info:
output: "target/nextflow/bedtools/bedtools_getfasta"
executable: "target/nextflow/bedtools/bedtools_getfasta/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/bedtools/bedtools_getfasta/main.nf
View File

@@ -3033,7 +3033,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/bedtools/bedtools_getfasta",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/busco/busco_download_datasets/.config.vsh.yaml
View File

@@ -144,7 +144,7 @@ build_info:
output: "target/nextflow/busco/busco_download_datasets"
executable: "target/nextflow/busco/busco_download_datasets/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/busco/busco_download_datasets/main.nf
View File

@@ -2959,7 +2959,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/busco/busco_download_datasets",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/busco/busco_list_datasets/.config.vsh.yaml
View File

@@ -131,7 +131,7 @@ build_info:
output: "target/nextflow/busco/busco_list_datasets"
executable: "target/nextflow/busco/busco_list_datasets/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/busco/busco_list_datasets/main.nf
View File

@@ -2945,7 +2945,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/busco/busco_list_datasets",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/busco/busco_run/.config.vsh.yaml
View File

@@ -409,7 +409,7 @@ build_info:
output: "target/nextflow/busco/busco_run"
executable: "target/nextflow/busco/busco_run/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/busco/busco_run/main.nf
View File

@@ -3257,7 +3257,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/busco/busco_run",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/cutadapt/.config.vsh.yaml
View File

@@ -727,7 +727,7 @@ build_info:
output: "target/nextflow/cutadapt"
executable: "target/nextflow/cutadapt/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/cutadapt/main.nf
View File

@@ -3568,7 +3568,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/cutadapt",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/falco/.config.vsh.yaml
View File

@@ -304,7 +304,7 @@ build_info:
output: "target/nextflow/falco"
executable: "target/nextflow/falco/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/falco/main.nf
View File

@@ -3119,7 +3119,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/falco",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/fastp/.config.vsh.yaml
View File

@@ -1065,7 +1065,7 @@ build_info:
output: "target/nextflow/fastp"
executable: "target/nextflow/fastp/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/fastp/main.nf
View File

@@ -3965,7 +3965,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/fastp",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/featurecounts/.config.vsh.yaml
View File

@@ -631,7 +631,7 @@ build_info:
output: "target/nextflow/featurecounts"
executable: "target/nextflow/featurecounts/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/featurecounts/main.nf
View File

@@ -3497,7 +3497,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/featurecounts",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/gffread/.config.vsh.yaml
View File

@@ -671,7 +671,7 @@ build_info:
output: "target/nextflow/gffread"
executable: "target/nextflow/gffread/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/gffread/main.nf
View File

@@ -3554,7 +3554,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/gffread",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/lofreq/lofreq_call/.config.vsh.yaml
View File

@@ -489,7 +489,7 @@ build_info:
output: "target/nextflow/lofreq/lofreq_call"
executable: "target/nextflow/lofreq/lofreq_call/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/lofreq/lofreq_call/main.nf
View File

@@ -3356,7 +3356,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/lofreq/lofreq_call",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/lofreq/lofreq_indelqual/.config.vsh.yaml
View File

@@ -197,7 +197,7 @@ build_info:
output: "target/nextflow/lofreq/lofreq_indelqual"
executable: "target/nextflow/lofreq/lofreq_indelqual/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/lofreq/lofreq_indelqual/main.nf
View File

@@ -3019,7 +3019,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/lofreq/lofreq_indelqual",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/multiqc/.config.vsh.yaml
View File

@@ -442,7 +442,7 @@ build_info:
output: "target/nextflow/multiqc"
executable: "target/nextflow/multiqc/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/multiqc/main.nf
View File

@@ -3314,7 +3314,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/multiqc",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/pear/.config.vsh.yaml
View File

@@ -380,7 +380,7 @@ build_info:
output: "target/nextflow/pear"
executable: "target/nextflow/pear/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/pear/main.nf
View File

@@ -3201,7 +3201,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/pear",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/qualimap/.config.vsh.yaml
View File

@@ -272,7 +272,7 @@ build_info:
output: "target/nextflow/qualimap"
executable: "target/nextflow/qualimap/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/qualimap/main.nf
View File

@@ -3109,7 +3109,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/qualimap",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/salmon/salmon_index/.config.vsh.yaml
View File

@@ -263,7 +263,7 @@ build_info:
output: "target/nextflow/salmon/salmon_index"
executable: "target/nextflow/salmon/salmon_index/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/salmon/salmon_index/main.nf
View File

@@ -3077,7 +3077,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/salmon/salmon_index",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/salmon/salmon_quant/.config.vsh.yaml
View File

@@ -1159,7 +1159,7 @@ build_info:
output: "target/nextflow/salmon/salmon_quant"
executable: "target/nextflow/salmon/salmon_quant/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/salmon/salmon_quant/main.nf
View File

@@ -3912,7 +3912,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/salmon/salmon_quant",
"viash_version" : "0.9.0-RC6",
"git_commit" : "58d7dacfc28af316aebc8f11c3facc6c9671e94b",
"git_commit" : "e6420cd80f226128b7223ff79ce1297f99993657",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/samtools/samtools_collate/.config.vsh.yaml
View File

@@ -250,7 +250,7 @@ build_info:
output: "target/nextflow/samtools/samtools_collate"
executable: "target/nextflow/samtools/samtools_collate/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "58d7dacfc28af316aebc8f11c3facc6c9671e94b"
git_commit: "e6420cd80f226128b7223ff79ce1297f99993657"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

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