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38a478d5ae
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Build branch main with version main (a13b57d)
Build pipeline: viash-hub.biobox.main-t7scl
Source commit: a13b57d04a
Source message: Add bases2fastq (#167)
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2024-11-26 14:40:26 +00:00 |
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6b56570131
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Build branch main with version main (065297b)
Build pipeline: viash-hub.biobox.main-nh6xw
Source commit: 065297be5f
Source message: Add sgdemux (#166)
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2024-11-14 13:36:35 +00:00 |
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dffc02813f
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Build branch main with version main (1d17ce0)
Build pipeline: viash-hub.biobox.main-79vlw
Source commit: 1d17ce01e2
Source message: Add cellranger_mkref (#164)
* initial commit dedup
* Revert "initial commit dedup"
This reverts commit 38f586bec0ac9e4312b016e29c3aa0bd53f292b2.
* mkref component - config, test data, scripts, changelog
* Small updates
* Update CHANGELOG
* Update src/cellranger/cellranger_mkref/script.sh
---------
Co-authored-by: DriesSchaumont <5946712+DriesSchaumont@users.noreply.github.com>
Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
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2024-11-08 10:06:06 +00:00 |
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b77e39f22a
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Build branch main with version main (b3fcd52)
Build pipeline: viash-hub.biobox.main-8bbc7
Source commit: b3fcd52f20
Source message: Fix multiple components (#162)
* output index when only_build_index is true
* fix threads option
* fix argument type and add log
* fix output handling
* fix output arguments and update docker image
* fix log2stderr argument and remove discard reads option
* remove echo
* update bbsplit build index test
* add workdir
* apply suggestions from code review
* accept more than two reference files
* update changelog
* update changelog
* remove indentation
* minor fixes
* fix descriptions
---------
Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
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2024-11-08 09:40:57 +00:00 |
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c71aa10adc
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Build branch main with version main (06005a7)
Build pipeline: viash-hub.biobox.main-s2mvx
Source commit: 06005a79b4
Source message: Add agat convert mfannot2gff (#112)
* add help
* add config
* add run script
* add test data and expected output + script to fetch them
* add test
* update changelog
* cleanup
* create temporary directory and clean up on exit
* add requirements
* update keywords
* update --config description
* add set -eo pipefail to script and test files
* fxi create temporary directory
* cleanup changelog
* cleanup changelog
---------
Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
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2024-11-02 09:53:24 +00:00 |
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a7b0d33a32
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Build branch main with version main (aa43543)
Build pipeline: viash-hub.biobox.main-2k68h
Source commit: aa43543e1f
Source message: Rseqc innerdistance (#159)
* initial commit dedup
* Revert "initial commit dedup"
This reverts commit 38f586bec0ac9e4312b016e29c3aa0bd53f292b2.
* full component with two tests
* fix default values
* adjust argument names and container image
---------
Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
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2024-10-26 19:02:37 +00:00 |
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35f315e911
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Build branch main with version main (52f44f5)
Build pipeline: viash-hub.biobox.main-xrs9m
Source commit: 52f44f5049
Source message: Add agat sp add introns (#104)
* add help
* add config
* add run script
* add test data and expected output + script to fetch them
* add tests
* update changelog
* Update src/agat/agat_sp_add_introns/config.vsh.yaml
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
* Update src/agat/agat_sp_add_introns/config.vsh.yaml
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
* Update src/agat/agat_sp_add_introns/config.vsh.yaml
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
* # create temporary directory and clean up on exit
* add set -e to test
* fix create temporary directory
* fix create temporary directory
* add set -eo pipefail to test
* add set -eo pipefail to script
* remove file added by mistake
* update --config description
* cleanup changelog
* cleanup changelog
* minor changes to config
* reduce test data size
---------
Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
Co-authored-by: Emma Rousseau <emmarou1@icloud.com>
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2024-10-26 13:31:11 +00:00 |
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