CI
6df312e701
Build pipeline: viash-hub.biobox.gatk-applybqsrspark-jpq6r
Source commit: c4ea23a0f5
Source message: Add RSEM prepare reference component (#89)
* initial commit
* incorporaate some requested changes
* update test
* change argument reference_fasta_files to multiple true and update docker setup
* Update src/rsem/rsem_prepare_reference/config.vsh.yaml
Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
* Update src/rsem/rsem_prepare_reference/config.vsh.yaml
Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
* Update src/rsem/rsem_prepare_reference/script.sh
Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
* set multiple true
* update changelog
* Apply suggestions from code review
* fix script
---------
Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
63 lines
2.4 KiB
Plaintext
63 lines
2.4 KiB
Plaintext
---
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format: gfm
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---
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```{r setup, include=FALSE}
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project <- yaml::read_yaml("_viash.yaml")
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license <- paste0(project$links$repository, "/blob/main/LICENSE")
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contributing <- paste0(project$links$repository, "/blob/main/CONTRIBUTING.md")
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```
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# 🌱📦 `r project$name`
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[](https://web.viash-hub.com/packages/`r project$name`)
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[](`r project$links$repository`)
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[](`r license`)
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[](`r project$links$issue_tracker`)
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[![Viash version](https://img.shields.io/badge/Viash-v`r gsub("-", "--", project$viash_version)`-blue)](https://viash.io)
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`r project$description`
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## Objectives
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- **Reusability**: Facilitating the use of components across various projects and contexts.
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- **Reproducibility**: Ensuring that components are reproducible and can be easily shared.
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- **Best Practices**: Adhering to established standards in software development and bioinformatics.
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## Contributing
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We encourage contributions from the community. To contribute:
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1. **Fork the Repository**: Start by forking this repository to your account.
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2. **Develop Your Component**: Create your Viash component, ensuring it aligns with our best practices (detailed below).
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3. **Submit a Pull Request**: After testing your component, submit a pull request for review.
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## Contribution Guidelines
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The contribution guidelines describes which steps you should follow to contribute a component to this repository.
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```{r echo=FALSE}
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lines <- readr::read_lines("CONTRIBUTING.md")
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index_start <- grep("^### Step [0-9]*:", lines)
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index_end <- c(index_start[-1] - 1, length(lines))
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name <- gsub("^### Step [0-9]*: *", "", lines[index_start])
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knitr::asis_output(
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paste(paste0(" 1. ", name, "\n"), collapse = "")
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)
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```
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See the [CONTRIBUTING](`r contributing`) file for more details.
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## Support and Community
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For support, questions, or to join our community:
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- **Issues**: Submit questions or issues via the [GitHub issue tracker](`r project$links$issue_tracker`).
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- **Discussions**: Join our discussions via [GitHub Discussions](`r project$links$repository`/discussions).
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## License
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This repository is licensed under an MIT license. See the [LICENSE](`r license`) file for details.
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