Files
biobox/_viash.yaml
CI 6df312e701 Build branch gatk_applybqsrspark with version gatk_applybqsrspark (c4ea23a)
Build pipeline: viash-hub.biobox.gatk-applybqsrspark-jpq6r

Source commit: c4ea23a0f5

Source message: Add RSEM prepare reference component (#89)

* initial commit

* incorporaate some requested changes

* update test

* change argument reference_fasta_files to multiple true and update docker setup

* Update src/rsem/rsem_prepare_reference/config.vsh.yaml

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>

* Update src/rsem/rsem_prepare_reference/config.vsh.yaml

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>

* Update src/rsem/rsem_prepare_reference/script.sh

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>

* set multiple true

* update changelog

* Apply suggestions from code review

* fix script

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
2024-09-01 17:36:53 +00:00

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YAML

name: biobox
description: |
A collection of bioinformatics tools for working with sequence data.
license: MIT
keywords: [bioinformatics, modules, sequencing]
links:
issue_tracker: https://github.com/viash-hub/biobox/issues
repository: https://github.com/viash-hub/biobox
viash_version: 0.9.0-RC7
config_mods: |
.requirements.commands := ['ps']