CI
a7b0d33a32
Build pipeline: viash-hub.biobox.main-2k68h
Source commit: aa43543e1f
Source message: Rseqc innerdistance (#159)
* initial commit dedup
* Revert "initial commit dedup"
This reverts commit 38f586bec0ac9e4312b016e29c3aa0bd53f292b2.
* full component with two tests
* fix default values
* adjust argument names and container image
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Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
15 lines
925 B
Bash
Executable File
15 lines
925 B
Bash
Executable File
#!/bin/bash
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# clone repo
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if [ ! -d /tmp/agat_source ]; then
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git clone --depth 1 --single-branch --branch master https://github.com/NBISweden/AGAT /tmp/agat_source
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fi
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# copy test data
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cp -r /tmp/agat_source/t/scripts_output/in/agat_sp_merge_annotations/file1.gff src/agat/agat_sp_merge_annotations/test_data
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cp -r /tmp/agat_source/t/scripts_output/in/agat_sp_merge_annotations/file2.gff src/agat/agat_sp_merge_annotations/test_data
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cp -r /tmp/agat_source/t/scripts_output/out/agat_sp_merge_annotations_1.gff src/agat/agat_sp_merge_annotations/test_data
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cp -r /tmp/agat_source/t/scripts_output/in/agat_sp_merge_annotations/fileA.gff src/agat/agat_sp_merge_annotations/test_data
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cp -r /tmp/agat_source/t/scripts_output/in/agat_sp_merge_annotations/fileB.gff src/agat/agat_sp_merge_annotations/test_data
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cp -r /tmp/agat_source/t/scripts_output/out/agat_sp_merge_annotations_2.gff src/agat/agat_sp_merge_annotations/test_data |