CI
f47054953e
Build pipeline: viash-hub.biobox.main-dz9k8
Source commit: 38f635ad57
Source message: Add agat convert genscan2gff (#100)
* add config
* add help
* add test data and expected output adn the script to obtain them
* add running script
* add test script
* update changelog
* cleanup
* fix tests
* format description
* remove unused argument --inflate-off
* update --config description
* add requirements
* create temporary directory and clean up on exit
* add GENSCAN in keywords
* add set -e to test
* fix create temporary directory
* add set -eo pipefail to test
* add set -eo pipefail to script
* fix create temporary directory
* update --config description
* cleanup changelog
* cleanup changelog
* Update deprecated variable
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Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
🌱📦 biobox
A collection of bioinformatics tools for working with sequence data.
Objectives
- Reusability: Facilitating the use of components across various projects and contexts.
- Reproducibility: Ensuring that components are reproducible and can be easily shared.
- Best Practices: Adhering to established standards in software development and bioinformatics.
Contributing
We encourage contributions from the community. To contribute:
- Fork the Repository: Start by forking this repository to your account.
- Develop Your Component: Create your Viash component, ensuring it aligns with our best practices (detailed below).
- Submit a Pull Request: After testing your component, submit a pull request for review.
Contribution Guidelines
The contribution guidelines describes which steps you should follow to contribute a component to this repository.
- Find a component to contribute
- Add config template
- Fill in the metadata
- Find a suitable container
- Create help file
- Create or fetch test data
- Add arguments for the input files
- Add arguments for the output files
- Add arguments for the other arguments
- Add a Docker engine
- Write a runner script
- Create test script
- Create a
/var/software_versions.txtfile
See the CONTRIBUTING file for more details.
Support and Community
For support, questions, or to join our community:
- Issues: Submit questions or issues via the GitHub issue tracker.
- Discussions: Join our discussions via GitHub Discussions.
License
This repository is licensed under an MIT license. See the LICENSE file for details.