CI f47054953e Build branch main with version main (38f635a) ...

Build pipeline: viash-hub.biobox.main-dz9k8

Source commit: 38f635ad57

Source message: Add agat convert genscan2gff (#100)

* add config

* add help

* add test data and expected output adn the script to obtain them

* add running script

* add test script

* update changelog

* cleanup

* fix tests

* format description

* remove unused argument --inflate-off

* update --config description

* add requirements

* create temporary directory and clean up on exit

* add GENSCAN in keywords

* add set -e to test

* fix create temporary directory

* add set -eo pipefail to test

* add set -eo pipefail to script

* fix create temporary directory

* update --config description

* cleanup changelog

* cleanup changelog

* Update deprecated variable

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>

2024-09-17 07:19:20 +00:00

..

agat

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

arriba

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

bcftools

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

bcl_convert

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

bd_rhapsody/bd_rhapsody_make_reference

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

bedtools

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

busco

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

cutadapt

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

falco

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

fastp

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

fastqc

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

featurecounts

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

fq_subsample

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

gffread

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

kallisto/kallisto_index

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

lofreq

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

multiqc

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

pear

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

qualimap/qualimap_rnaseq

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

rsem/rsem_prepare_reference

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

salmon

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

samtools

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

seqtk

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

sortmerna

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

star

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00

umi_tools

Build branch main with version main (38f635a)

2024-09-17 07:19:20 +00:00